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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGGGATGAGACGTTTATAATAGCAGCTCTTATGGCTATGCGTCACCCTAAGTCAATTGTCTTGTCTGGTGCTCTCAGTGCTCTGATTATAATGACAgtaagtgcaacatgggatgcatttttggttttaatatttctgcattgttgtttctcattattggatgtactttttgtgttgttgtgatggaatggtttgcgcaactacagagcactatttctgggtgctctaacttttcatattaatgttatcaggattaaagttactgtacgtgtcaattag

Basic information

species Glycine max
transcript GLYMA18G47670.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47670.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G151863_T01 (Zea mays), 5'ss of exon 4
ATTGGGGATGAGACGTTTATAATAGCAGCTCTTATGGCTATGCGTCACCCTAAGTCAATTGTCTTGTCTGGTGCTCTCAGTGCTCTGATTATAATGACAgtaagtgcaacatgggatgcatttttggttttaatatttctgcattgttgtttct-cattattggatgtactttttgtgttgttgtgatggaatggtttgcgcaactacagagcactatttctgggtgctctaacttttcatattaatgttatcaggattaaagttactgtacgtgtcaattag
||||| |||||||| || || || || || || ||||| ||||| ||||| ||||||||||| ||||||||||| ||   ||| ||   | | |||||||| ||      ||   ||   | |||   | || || |||     ||||| || | |  ||    ||| |         |     |||| | ||   ||||  |  || |    |                                                                     
ATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACAgtgagc----tatttaattgctctttatctctattaattcc----tgttgcttatgcgctacacaatgca------aaatcaacttgatagtatctgttgca-agttagaattaa---------------------------------------------------------------------

upper sequence: GLYMA18G47670.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G151863_T04 (Zea mays), 5'ss of exon 3
-ATTGGGGATGAGACGTTTATAATAGCAGCTCTTATGGCTATGCGTCACCCTAAGTCAATTGTCTTGTCTGGTGCTCTCAGTGCTCTGATTATAATGACAgtaagtgcaacatgggatgcatttttggttttaatatttctgcattgttgtttct-cattattggatgtactttttgtgttgttgtgatggaatggtttgcgcaactacagagcactatttctgggtgctctaacttttcatattaatgttatcaggattaaagttactgtacgtgtcaattag
 ||||| |||||||| || || || || || || ||||| ||||| ||||| ||||||||||| ||||||||||| ||   ||| ||   | | |||||||| ||      ||   ||   | |||   | || || |||     ||||| || | |  ||    ||| |         |     |||| | ||   ||||  |  || |    |                                                                     
GATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACAgtgagc----tatttaattgctctttatctctattaattcc----tgttgcttatgcgctacacaatgca------aaatcaacttgatagtatctgttgca-agttagaattaa---------------------------------------------------------------------

upper sequence: GLYMA18G47670.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0023g00380.t01 (Vitis vinifera), 5'ss of exon 4
ATTGGGGATGAGACGTTTATAATAGCAGCTCTTATGGCTATGCGTCACCCTAAGTCAATTGTCTTGTCTGGTGCTCTCAGTGCTCTGATTATAATGACAgtaagtgcaacatgggatgcatttttggttttaatatttctgcattgttgtttctcattattggatgtactttttgtgttgttgtgatggaatggtttgcgcaactacagagcactatttctgggtgctctaacttttcatattaatgttatcaggattaaagttactgtacgtgtcaattag
||||| ||||| || ||||||||||||||||||||||| ||| | |||||||| |||||||| || |||||||| ||||||||| ||||| ||||||| |||||      ||    |   || ||  ||||   ||    |   |||   || |  |  || |   | ||   | |||| || |||||      |   ||                                                                                  
ATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCTAAATCAATTGTTTTATCTGGTGCGCTCAGTGCTTTGATTGTAATGACGgtaagc----tatctattttcttgtttattttc-catacaagagctgtacctttttgtgcttcggctttctccatttgttcttctgatgccccaatgcacgtgtg------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325593|gb|FK019449.1|FK019449
EST:     CTAAGTCAATTGTCTTGTCTGGTGCTCTCAGTGCTCTGATTATAATGACA                         GTACTTTCTACAGG-CTTG
genomic: CTAAGTCAATTGTCTTGTCTGGTGCTCTCAGTGCTCTGATTATAATGACAgtaagtgcaa ... tgtcaattagGTACTTTCTACAGGGCTTG
EST: gi|213605011|gb|DB956358.1|DB956358
EST:     CTAAGTCAATTGTCTTGTCTGGTGCTCTCAGTGCTCTGATTATAATGACA                         GTACTTTCTAC
genomic: CTAAGTCAATTGTCTTGTCTGGTGCTCTCAGTGCTCTGATTATAATGACAgtaagtgcaa ... tgtcaattagGTACTTTCTAC
EST: gi|193574918|gb|FK531177.1|FK531177
EST:     TCTTGTCTGGTGCTCTCAGTGCTCTGATTATAATGACA                         GTACTTTCTACAGGGCTTGGCAGGATTGTGCCAAATTTGATTTCTAGGAAG
genomic: TCTTGTCTGGTGCTCTCAGTGCTCTGATTATAATGACAgtaagtgcaa ... tgtcaattagGTACTTTCTACAGGGCTTGGCAGGATTGTGCCAAATTTGATTTCTAGGAAG
EST: gi|193437896|gb|FK403567.1|FK403567
EST:     CTAAGTCAATTGTCTTGTCTGGTGCTCTCAGTGCTCTGATTATAATGACA                         GTACTTTCTAC
genomic: CTAAGTCAATTGTCTTGTCTGGTGCTCTCAGTGCTCTGATTATAATGACAgtaagtgcaa ... tgtcaattagGTACTTTCTAC
EST: gi|254344439|gb|GR851136.1|GR851136
EST:     CTAAGTCAATTGTCTTGTCTGGTGCTCTCAGTGCTCTGATTATAATGACA                         GTACTTTCTACAGGGCTTGGCAGGATTGTGCCAAATTTGATTTCTAGGA-G
genomic: CTAAGTCAATTGTCTTGTCTGGTGCTCTCAGTGCTCTGATTATAATGACAgtaagtgcaa ... tgtcaattagGTACTTTCTACAGGGCTTGGCAGGATTGTGCCAAATTTGATTTCTAGGAAG