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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

agtaagcatccgttgcctctctttatgtctgtcgtttcgttcggttcgattggattgtagtgagaattgaatagaatgcattgaaactggaaatgaatgtttcatgtttgtgtgctttctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGACTCCACTGGTCCTGGACTCTTCGACGCATTTTTCGCGAGTTTTTCGATG

Basic information

species Glycine max
transcript GLYMA18G47670.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325593|gb|FK019449.1|FK019449
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCCCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|209723553|gb|BW672203.1|BW672203
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|193416691|gb|FK383251.1|FK383251
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATTAGAGAATGATTCGATCCTTTCTCTT
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACAT-AGAGAATGATTCGATCCTTTCTCTT
EST: gi|19935787|gb|BQ080586.1|BQ080586
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|19935946|gb|BQ080653.1|BQ080653
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|19938471|gb|BQ081735.1|BQ081735
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|209709461|gb|BW668377.1|BW668377
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|193672427|gb|FK617187.1|FK617187
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCG
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCG
EST: gi|19934369|gb|BQ079399.1|BQ079399
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|213605011|gb|DB956358.1|DB956358
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|193437896|gb|FK403567.1|FK403567
EST:     GTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: GTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|298173171|gb|HO020155.1|HO020155
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|254344439|gb|GR851136.1|GR851136
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaatgcattgaaactggaaatgaatgtttcatgtttgtgtgctttctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGACTCCACTGGTCCTGGACTCTTCGACGCATTTTTCGCGAGTTTTTCGATG
                                        tgctttctct  CT-rich tract
                  aaatgaat  TA-rich tract