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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTCTCTCGTTCAGAACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatccgttgcctctctttatgtctgtcgtttcgttcggttcgattggattgtagtgagaattgaatagaatgcattgaaactggaaatgaatgtttcatgtttgtgtgctttctctgaaca

Basic information

species Glycine max
transcript GLYMA18G47670.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325593|gb|FK019449.1|FK019449
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCCCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|209723553|gb|BW672203.1|BW672203
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|193416691|gb|FK383251.1|FK383251
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATTAGAGAATGATTCGATCCTTTCTCTT
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACAT-AGAGAATGATTCGATCCTTTCTCTT
EST: gi|19935787|gb|BQ080586.1|BQ080586
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|19935946|gb|BQ080653.1|BQ080653
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|19938471|gb|BQ081735.1|BQ081735
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|209709461|gb|BW668377.1|BW668377
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|193672427|gb|FK617187.1|FK617187
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCG
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCG
EST: gi|19934369|gb|BQ079399.1|BQ079399
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|213605011|gb|DB956358.1|DB956358
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|193437896|gb|FK403567.1|FK403567
EST:     GTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: GTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|298173171|gb|HO020155.1|HO020155
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
EST: gi|254344439|gb|GR851136.1|GR851136
EST:     AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAA                         AATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA
genomic: AACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatc ... tctctgaacaGATTGCATTGAATGACATAGAGAATGATTCGATCCTTTCTCTTGGCTTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATTCTCTCGTTCAGAACGCGAAGGAAGATTCCGGCGGATCTGTGGATCTCGGTCGCCGCGCCAAagtaagcatccgttgcctctctttatgtctgtcgtttcgttcggttcgattggattgtagtgagaattgaatagaatgcattgaaactggaaatgaatgtttcatgtttgtgtgctttctctgaaca

- - - - - - - - - - - AAGGAA
- - - - - - - - - - - - GGAAGA