1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggattctatactcattaattggttcaatttttttatatattctttttttacctggttcagatttggtacatgctaagaattgattaatcttgttaactagGTTGAAGAAAAACTGGATGGTGGACAAGGGAAAACTTCAGTTCGGCGCTTCTTTTCAAGATTCTGTACACCAATATTTTTGGAG
species | Glycine max |
transcript | GLYMA18G47670.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATGGAGATCATCAGATTCAAAATCCTCACAGAAGAAAGAAATGGAAGAA GTTGAAGAAAAACTGGATGEST: gi|208289098|gb|GE088051.1|GE088051
genomic: CATGGAGATCATCAGATTCAAAATCCTCACAGAAGAAAGAAATGGAAGAAgtatgttttt ... tgttaactagGTTGAAGAAAAACTGGATG
EST: CATGGAGATCATCAGATTCAAAATCCTCACAGAAGAAAGAAATGGAAGAA GTTGAAGAAAAACTGGATGGTGGACAAGGGAAAAACTTCAGTTCGGCGCTTEST: gi|193487947|gb|FK453152.1|FK453152
genomic: CATGGAGATCATCAGATTCAAAATCCTCACAGAAGAAAGAAATGGAAGAAgtatgttttt ... tgttaactagGTTGAAGAAAAACTGGATGGTGGACAAGGGAAAA-CTTCAGTTCGGCGCTT
EST: CATGGAGATCATCAGATTCAAAATCCTCACAGAAGAAAGAAATGGAAGAA GTTGAAGAAAAACTGGATGGTGGACEST: gi|207848713|gb|GD820214.1|GD820214
genomic: CATGGAGATCATCAGATTCAAAATCCTCACAGAAGAAAGAAATGGAAGAAgtatgttttt ... tgttaactagGTTGAAGAAAAACTGGATGGTGGAC
EST: CATGGAGATCATCAGATTCAAAATCCTCACAGAAGAAAGAAATGGAAGAA GTTGAAGAAAAACTGGATGGTGGACAAGGGAAAACTTCAGTTCGGCGCTTC
genomic: CATGGAGATCATCAGATTCAAAATCCTCACAGAAGAAAGAAATGGAAGAAgtatgttttt ... tgttaactagGTTGAAGAAAAACTGGATGGTGGACAAGGGAAAACTTCAGTTCGGCGCTTC
ttttacctggttcagatttggtacatgctaagaattgattaatcttgttaactagGTTGAAGAAAAACTGGATGGTGGACAAGGGAAAACTTCAGTTCGGCGCTTCTTTTCAAGATTCTGTACACCAATATTTTTGGAG
gattaat putative branch site (score: 3)
tcttgtt CT-rich tract
taagaattgattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggattctatactcattaattggttcaatttttttatatattctttttttacctggttcagatttggtacatgctaagaattgattaatcttgttaactagGTTGAAGAAAAACTGGATGGTGGACAAGGGAAAACTTCAGTTCGGCGCTTCTTTTCAAGATTCTGTACACCAATATTTTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgct