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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagcaacttttcttttctatttattttattttatgacttcatagatagaaattaacgacattttagtttgctgattgcttttatgttttattcttttgaaaaaatcatttttcatctttatatgttacttttttttttgtcacagTCTCTGCTTCCAGATTACCAACGACTATTGAGTTCCATGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGCG

Basic information

species Glycine max
transcript GLYMA18G47590.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47590.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G40730.1 (Arabidopsis thaliana), 3'ss of exon 7
gtcagcaacttttcttttctatttattttattttatgacttcatagatagaaattaacgacattttagtttgctgattgcttttatgttttattcttttgaaaaaatcatttttcatctttatatgttacttttttttttgtcacagTCTCTGCTTCCAGATTACCAACGACTATTGAGTTCCATGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGCG
                                           |      ||| |   ||  | ||| |||  |   || || ||||  ||    || |  || |      ||| || |   |   | | ||||| |||| ||||||||||||||||||||||| || |||||  | ||||||||||| ||||| ||||| || || ||||| ||| |||||||  |||
-----------------------------------------tgtttccccaaagttttgatgtgttacttt-ttatctgtttgtatgactttgaattct--aagagctggctttgatttcggt---tgaatttttcttttctcacagTCTCTGCTTCCAGATTATCAGCGACTCCTAAGTTCCATGCCTTCTCGCAGATTGAACACCTCAAAACTTCTAGAAAATGGCG

upper sequence: GLYMA18G47590.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv13s0067g03110.t01 (Vitis vinifera), 3'ss of exon 7
--------------------------------------gtcagcaacttttcttttctatttattttattttatgacttcatagatagaaat--taacgacattttagtttgctgattgct-tttatgttttattcttttgaaaaaatcatttttcatctttatatgttacttttttttttgtcacagTCTCTGCTTCCAGATTACCAACGACTATTGAGTTCCATGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGCG
                                       |  ||   || ||   |    | | |||  ||||    | |    || ||  |       |  | |  |  ||    |     ||||  | | |  ||||||||||| ||||||| ||| |  || |||    |||| || | ||||||||||| ||||||||||| || || || ||||||||||||||  |||| || || || ||||| |||||||||||||| || |
gtcagtttttaattgtttgggatggatcattgattgcaattggccctttctccggttctatcactttgctttacttttcctctcatggagttgccttttatgtatgtgcatgtgtgtcatggtttacttctcaagcttttgaaaaattcatttt-catttgcatctgtc-tattttcttgtctcacagTCTCTACTTCCAGATTATCAGCGGCTCTTGAGTTCCATGCCTGCTCGCAGGTTGAACACATCGAAGCTTATAGAAAATAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttttgaaaaaatcatttttcatctttatatgttacttttttttttgtcacagTCTCTGCTTCCAGATTACCAACGACTATTGAGTTCCATGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGCG
                                  ttacttttttttttgt  CT-rich tract
        aaaaaatcatttttca  TA-rich tract