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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcagaatcatacacatgtatctataactcttcttcattgttacacttttcttccaacattcttttcacataattttgaatttttatctttcagGCATTATGGCTTTATGCGCCACCAGTTCCTACTATGACATCACTGAAGTTGCAACCCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGACAG

Basic information

species Glycine max
transcript GLYMA18G47590.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47590.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv13s0067g03110.t01 (Vitis vinifera), 3'ss of exon 15
-----gtatcagaatcatacacatgtatctataactcttcttcattgttacacttttcttccaacattcttttcacataattttgaatttttatctttcagGCATTATGGCTTTATGCGCCACCAGTTCCTACTATGACATCACTGAAGTTGCAACCCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGACAG
     | |  |  | ||   | |   ||   | |   | |    |  ||   |  ||  |         |||| ||| |||||  |||| || | |  ||||  ||||||||||||| || |||||||| || ||||||||||| ||  ||||||| |||||||| || ||||||||||| || || ||||||||||||||
cagaaggaaaaagaacaagaaaaaaaattatttaggttgcaatttaattcgtcagttaatgtggatgggttttgaca-aatttaaaattgttttgtggcagGAGTTATGGCTTTATGTGCGACCAGTTCTTATTATGACATCACAGAGATTGCAACTCGGATTCTGCCAAATGTTGTTGTACTTACCATTGATCCTGACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacacttttcttccaacattcttttcacataattttgaatttttatctttcagGCATTATGGCTTTATGCGCCACCAGTTCCTACTATGACATCACTGAAGTTGCAACCCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGACAG
                                         tttttatctttc  CT-rich tract
                   attcttttcacataat  TA-rich tract