Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcattcaatttctctacttttttttttgttcttgacaattcctttttgtacaatatatacaaacattcatgttgacaatgtggatactttgaaattcttagGTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAG

Basic information

species Glycine max
transcript GLYMA18G47590.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47590.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os01g60440.1 (Oryza sativa), 3'ss of exon 11
gtatgcattcaatttctctacttttttttttgttcttgacaattcctttttgtacaatatatacaaacattcatg-ttgacaatgtggatactttgaaattcttagGTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAG
                | | || |  |||    | | ||||       | || |     |     ||  || ||| ||||||   |  |||  |  ||      |||||| ||| |||||||| ||||||||||| ||||| |||||||||||  | ||||||||  | ||||||||| |  |  |||| || || 
---------------gtatgctatcatttcctgtatggaca-------tctgcatgtgtttctggaatgttgatgcttgacaggataaatatctctaa---tgcagGTTTTCCCCCATGTTGCCACTGGGTTCTCTGATACTTCTGCTTTTCTTCGTGAACTGACCTTGAAGTCTATGCTTGTATTGGCACCCAAA

upper sequence: GLYMA18G47590.1 (Glycine max), 3'ss of exon 11
lower sequence: AT2G40730.1 (Arabidopsis thaliana), 3'ss of exon 11
gtatgcattcaatttctctactttt----------ttttttgttcttgacaattcctttttgtacaatata--tacaaacattca-tgttgacaatgtggatactttgaaattcttagGTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAG
   |    ||| ||||||| || |           | ||    | | |    ||     |  | |  | ||  | || || || |   || |||||| ||||   ||    ||  ||||| |||||||||||||||||||| ||  | |||||||||||||||||| | || ||||||||||| || ||| |  || | ||||| |||
--gtaagatcagtttctcttctgtggcaagaaaggtgttcacctatgggtgtttgacagtactgctgtctaattgcatacttttagcatttacaatg-ggatgtgtt---tttactagGTATACCCTCATGTTGCTACTGGATTTGCGGATACATCTGCTTTTCTCCGAGAGCTGACTCTTAAATCGATGCTCGTTTTAGCTCCGAAG

upper sequence: GLYMA18G47590.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv13s0067g03110.t01 (Vitis vinifera), 3'ss of exon 11
gtatgcattcaatttctctacttttttttttgttcttgacaattcct-ttttgtacaatatata-----caaacattcatgttgacaatgtggatactttgaaattctt----------------agGTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAG
|||||       |||||  |   |||  |    | ||  |  | | | ||||| |||  | |||        |  ||        |||| |||| | | | |||| |||                |||||||  |||||||||||||||||||||| || || |||||||||||  ||||| |||| ||||| || ||| | ||||| ||||| |||
gtatggtagtggtttctgaatgatttaatcaaattttagctgtccatgttttggacataagataatgcttgtatcttttcaccatcaatttggaaattctaaaatgcttggtgatgcttggcactagGTTTATACTCATGTTGCTACTGGGTTCTCAGACACGTCTGCTTTTCTTCGGGAATTGACACTTAAATCCATGCTTATTCTTGCTCCTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtacaatatatacaaacattcatgttgacaatgtggatactttgaaattcttagGTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAG
                       tgttgac  putative branch site (score: 3)
                                                ttctt  putative PPT
     aatatatacaaacatt  TA-rich tract