Sequence
atgc intronic sequence ATGC exonic sequencegtatgttccaaatgtgctctgaaattcaaaccgtgtgctgtgttttatttaataatgttaggatatttttctttggtgaattaacgtggaagctattttgcagACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAG
Basic information
species | Glycine max |
transcript | GLYMA18G47590.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G47590.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os01g60440.1 (Oryza sativa), 3'ss of exon 14
----gtatgttccaaat--gtgctctgaaattcaaaccgtgtgctgtgttttatttaataatgttaggatatttttctttggtgaattaacgtggaagctattttg-cagACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAG
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cctggagttctccattcccttgcctagatatcgagttcattttctgt-ttgtactaaataa-gtaaatagtcattcct-------aacaatgtttg-gctattttgacagACTAGGAAAAGGGTATTGATCAACGCATTTACTGTCCGTGCATTACGTGATACCTTCCCCCCTGCTCGAGCAGCTG
upper sequence: GLYMA18G47590.1 (Glycine max), 3'ss of exon 14
lower sequence: AC218972.3_FGT001 (Zea mays), 3'ss of exon 14
gtatgttccaaatgtgctctgaaattcaaaccgtgtgctgtgttttatttaataatgttaggatatttttctttggtgaattaacgtggaa--gctattttgcagACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAG
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--atatgaaaaatagaactatgtat---agcctggagatggattttatttgctaattctagcatagtgtttgcttctttgctgacaaggctttgttatctgacagACAAGGAAGAGAGTACTGATCAATGCATTCACAGTTCGTGCATTACGTGATACCTTCCCTCCGGCCAGAGCAGCTG
upper sequence: GLYMA18G47590.1 (Glycine max), 3'ss of exon 14
lower sequence: AT2G40730.1 (Arabidopsis thaliana), 3'ss of exon 14
----gtatgttccaaatgtgctctgaaattcaaaccgtgtgctgtgttttatttaataatgt--taggatatttttctttggtgaattaacgtggaagctattttgcagACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAG
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gttagtctctagcagctttgtttttttcttttcttttgattccttgttacctttgtggatatattcttttgtttgtccctaatcaataatcatg-attatatgatgcagACAAGGAAAAGAGTTTTGATTAATGCTTTTACAGTGCGTGCATTGCGTGATACATTTCCACCTGCTCGAGGTGCAG
upper sequence: GLYMA18G47590.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv13s0067g03110.t01 (Vitis vinifera), 3'ss of exon 14
gtatgttccaaatgtgctctgaaattcaaaccgtgtgctgtgttttatttaataatgttaggatatttttctttg-------gtgaattaacgtgg---aagctattttgcagACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAG
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---------aggtagtgtttgtcatctaa----tgataactggataagttcataatgatatgatgtgtcctcaagtggaaatgtcaactgacggggttggatctacaatgcagACTAGGAAAAGAGTTTTGATAAATGCATTTACAGTTCGTGCATTGCGTGATACTTTCTCTCCTGCCCGAGGAGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaataatgttaggatatttttctttggtgaattaacgtggaagctattttgcagACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAG
aattaac putative branch site (score: 2)
ctatttt putative PPT
atatttttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttccaaatgtgctctgaaattcaaaccgtgtgctgtgttttatttaataatgttaggatatttttctttggtgaattaacgtggaagctattttgcagACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG