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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttactttcctattcttgattttcagattatctatttattttggtttggatttgtattttgtggattgtgttgtattgattgtgctgtggtgttactgttttttcagGTCAGGCATCCGAATATCTTGTCGTTTCTTCACAGCACTGAGATTGAGACGTATGATGCAGGTTCTCCTAAGGTTACAATATATATTGTGACCGAGCCTG

Basic information

species Glycine max
transcript GLYMA18G47590.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47590.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0067g03110.t01 (Vitis vinifera), 3'ss of exon 2
gtgtgttactttcctattcttgattttcagattatctatttattttggtttggatttgtattttgtggattgtgttgtattgattgtgctgtggtgttactgttttttcagGTCAGGCATCCGAATATCTTGTCGTTTCTTCACAGCACTGAGATTGAGACGTATGATGCAGGTTCTCCTAAGGTTACAATATATATTGTGACCGAGCCTG
       |      | || |   |||||||        | | |||   |||  |   ||  |   |  ||| || |   || |   | ||||  | || ||   |||||||||||||||||| ||||| || || ||||| ||||| ||||||  |||||| | |||||    |  | | || ||||| || |||||||| || |||||||
-------atgaagttgttttgagttttcaggagggtcttctctttgcctttctacccgtgataaatcaatt-tgattccttaaacttcctgt--ttttgct-ccttttcagGTCAGGCATCCAAATATTTTATCATTTCTGCACAGTACTGAGGCTGAGACTTTTGATGGTTCTAGTACAAAAGTTACTATCTATATTGTCACTGAGCCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtattttgtggattgtgttgtattgattgtgctgtggtgttactgttttttcagGTCAGGCATCCGAATATCTTGTCGTTTCTTCACAGCACTGAGATTGAGACGTATGATGCAGGTTCTCCTAAGGTTACAATATATATTGTGACCGAGCCTG
                     tattgat  putative branch site (score: 3)
                                           ctgttttttc  putative PPT
                     tattgatt  TA-rich tract