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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAGgtatgtctgttatatattgatataaatggattttgcttttgccctggtttctttttaaaatttaaaagtgttactggtgttattggaatgtcagatacat...

Basic information

species Glycine max
transcript GLYMA18G47590.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47590.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os01g60440.1 (Oryza sativa), 5'ss of exon 12
GTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAGgtatg--tctgttatatattgatataaatggattttgc-ttttgccctggtttctttttaaaatttaaaagtgttactggtgttattggaatgtcagatacat
|||| ||| |||||||| ||||||||||| ||||| |||||||||||  | ||||||||  | ||||||||| |  |  |||| || || ||| |   ||   |    |    || |      |||||     |  |    | ||| |  |  | |   | | |||||| |  |  ||   |  ||| |    
GTTTTCCCCCATGTTGCCACTGGGTTCTCTGATACTTCTGCTTTTCTTCGTGAACTGACCTTGAAGTCTATGCTTGTATTGGCACCCAAAgtaagaccctcccaaccctctgcatgatcaacatttgcaccccgaacaaaatccttgtggatgtctttcatttttactgattgtgctgtgttaacagttt---

upper sequence: GLYMA18G47590.1 (Glycine max), 5'ss of exon 12
lower sequence: AT2G40730.1 (Arabidopsis thaliana), 5'ss of exon 12
GTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAGgtat--gtctgttatatattgatataa----atggattttgcttttg-------ccctggtttctttttaaaatttaaaagtgtta-ctggtgttattggaatgtcagatacat---------------------------------------------------------------------
|| |||||||||||||||||||| ||  | |||||||||||||||||| | || ||||||||||| || ||| |  || | ||||| |||||||  ||   | |   ||| |         ||   |||| | || |       | |||  |  ||  |   || | ||    ||| || || ||  | |    ||| ||  ||                                                                     
GTATACCCTCATGTTGCTACTGGATTTGCGGATACATCTGCTTTTCTCCGAGAGCTGACTCTTAAATCGATGCTCGTTTTAGCTCCGAAGgtatctgttcttaacccattcaagccgctttatatgttttccgttagaaaaggtcactgtctgtttcatcccatctgaagactttagctcgtctttattgtcgttcacatttatatttgtcataatctagttgtatctgatataaattgtttttctcttttcttttgttgtctttggctgcag

upper sequence: GLYMA18G47590.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 12
GTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAGgtatgtctgttatatattgatataaatggattttgcttttgccctggtttctttttaaaatttaaaagtgttactggtgttattgg--aatgtcagatacat---
|||||  |||||||||||||||||||||| || || |||||||||||  ||||| |||| ||||| || ||| | ||||| ||||| |||||||     || ||| |  || | | |    |||| |       |  |  |||  |    |||   | |  |  ||    | |  |  | ||| |     ||   
GTTTATACTCATGTTGCTACTGGGTTCTCAGACACGTCTGCTTTTCTTCGGGAATTGACACTTAAATCCATGCTTATTCTTGCTCCTAAGgtat-----ttgtatctcaatttcatttttctttggtggcaatatcatagcttcatggtgtttggtaataatgatgaaactttctgttagtgtgatgagaattct