Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctctgtacctgtttatgatttctgcaccgtccctcattttgtcctagttcccacgttgtcattattgtgtctgtttccctaatgtttagtataattgataaggttgattgtttggatca

Basic information

species Glycine max
transcript GLYMA18G46830.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46830.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G45990.4 (Arabidopsis thaliana), 5'ss of exon 7
----------------------GCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagt----tctctgtacctgtttatgatttctgcaccgtccctcattttgtcctagttcccacgt-tgtcattattgtgtctgtttccctaatgtttagtataattgataaggttgattgtttggatca
                      | || || || ||  | || || ||  | ||||||||||| ||||||||||| |||||| |||||| ||| || || ||| ||    || || | ||   | || | |||||   |  |       || | ||       || | | |||  |  |                                                    
CTATGCATTTTTAATTTGGCCAGTTTCGTGGAAGACAGACTCGCAACGCTGAAAAATGTCATAAAAGAGCCTGAATTAGACAAATGGAGTTTATACCTAGgtggtctcttccctctcccatatcatcacttctggttccccttattggttattctgacaaaaacttatctcaaaacag----------------------------------------------------

upper sequence: GLYMA18G46830.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G45990.1 (Arabidopsis thaliana), 5'ss of exon 8
GCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagt----tctctgtacctgtttatgatttctgcaccgtccctcattttgtcctagttcccacgt-tgtcattattgtgtctgtttccctaatgtttagtataattgataaggttgattgtttggatca
  || || || ||  | || || ||  | ||||||||||| ||||||||||| |||||| |||||| ||| || || ||| ||    || || | ||   | || | |||||   |  |       || | ||       || | | |||  |  |                                                    
-TTTCGTGGAAGACAGACTCGCAACGCTGAAAAATGTCATAAAAGAGCCTGAATTAGACAAATGGAGTTTATACCTAGgtggtctcttccctctcccatatcatcacttctggttccccttattggttattctgacaaaaacttatctcaaaacag----------------------------------------------------

upper sequence: GLYMA18G46830.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G45990.3 (Arabidopsis thaliana), 5'ss of exon 8
GCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagt----tctctgtacctgtttatgatttctgcaccgtccctcattttgtcctagttcccacgt-tgtcattattgtgtctgtttccctaatgtttagtataattgataaggttgattgtttggatca
                 || || ||  | ||||||||||| ||||||||||| |||||| |||||| ||| || || ||| ||    || || | ||   | || | |||||   |  |       || | ||       || | | |||  |  |                                                    
----------------ACTCGCAACGCTGAAAAATGTCATAAAAGAGCCTGAATTAGACAAATGGAGTTTATACCTAGgtggtctcttccctctcccatatcatcacttctggttccccttattggttattctgacaaaaacttatctcaaaacag----------------------------------------------------

upper sequence: GLYMA18G46830.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0046g02330.t01 (Vitis vinifera), 5'ss of exon 8
GCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctctgtacctgtttatgatttctgcaccgtccctcattttgtcctagttcccacgttgtcattattgtgtctgtttccctaatgtttagtataattgataaggttgattgtttggatca
  |||||||| ||| | || || ||| | || |||||||||||||||||||| |||||    ||||||||||||||||||| || |   |  || ||  |  || ||          |   | | |  ||  | ||   |   | |  |||| ||| ||     ||||    |  |  |||     |                
-TTTTGTTGAAGATAGACTTGCAACCCTCAAGAATGTCATCAAAGAGCCTGAATTAGATGGGTGGAATTTGTATCTTGgtaatttttcctcact-ttgcttcttcctttgttaaaattacatgtatgttatcttcc---tcaacttccttgtctcttttcgttcaatggggtgccttgttggggcag----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58022185|gb|CX708926.1|CX708926
EST:     TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT                         GGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
genomic: TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctc ... gtttggatcaGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
EST: gi|6848327|gb|AW350617.1|AW350617
EST:     TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT                         GGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCCTAT
genomic: TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctc ... gtttggatcaGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTG-CTAT
EST: gi|151406125|gb|EV275940.1|EV275940
EST:     TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT                         GGTAATTGGGGTTACA-CACCCAGAAAGAA-GAGA
genomic: TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctc ... gtttggatcaGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGA
EST: gi|193433377|gb|FK395329.1|FK395329
EST:     TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT                         GGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
genomic: TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctc ... gtttggatcaGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
EST: gi|193364528|gb|FK333569.1|FK333569
EST:     TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT                         GGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
genomic: TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctc ... gtttggatcaGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
EST: gi|192315950|gb|FK008833.1|FK008833
EST:     TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT                         GGTAATTGGGGTTACAACACCCAGGAAGAAAGAGAGGAAGCTGCTGCTATC
genomic: TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctc ... gtttggatcaGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
EST: gi|209703964|gb|BW667954.1|BW667954
EST:     TCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT                         GGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTACC
genomic: TCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctc ... gtttggatcaGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
EST: gi|58025369|gb|CX712110.1|CX712110
EST:     TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT                         GGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
genomic: TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctc ... gtttggatcaGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
EST: gi|193360773|gb|FK326425.1|FK326425
EST:     TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT                         GGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
genomic: TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctc ... gtttggatcaGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
EST: gi|20497875|gb|BQ272805.1|BQ272805
EST:     TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT                         GGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
genomic: TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctc ... gtttggatcaGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
EST: gi|151411748|gb|EV281559.1|EV281559
EST:     TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT                         GGTAATTGGGGTTACAACACCCAGAAAGAA-GAGAGGAAGCTGCTGCTATC
genomic: TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctc ... gtttggatcaGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
EST: gi|192331285|gb|FK023782.1|FK023782
EST:     TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT                         GGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
genomic: TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctc ... gtttggatcaGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
EST: gi|6725773|gb|AW310172.1|AW310172
EST:     TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT                         GGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
genomic: TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctc ... gtttggatcaGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
EST: gi|58022451|gb|CX709192.1|CX709192
EST:     TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT                         GGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
genomic: TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctc ... gtttggatcaGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
EST: gi|58017891|gb|CX704633.1|CX704633
EST:     TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT                         GGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
genomic: TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctc ... gtttggatcaGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
EST: gi|57575865|gb|CX548836.1|CX548836
EST:     TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT                         GGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC
genomic: TAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTggtagttctc ... gtttggatcaGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATC