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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatactgtttagctgtaaataatggaattctggttatagctcttaaaattaataaaattctgctcttgcttgttaagatggttcacaataaattaactccagttaatcttaacca

Basic information

species Glycine max
transcript GLYMA18G46830.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58022185|gb|CX708926.1|CX708926
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|6848327|gb|AW350617.1|AW350617
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|151406125|gb|EV275940.1|EV275940
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|193433377|gb|FK395329.1|FK395329
EST:     AGTTCTGAAGCAGCTACNGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|193364528|gb|FK333569.1|FK333569
EST:     CCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: CCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|192315950|gb|FK008833.1|FK008833
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|58025369|gb|CX712110.1|CX712110
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|193360773|gb|FK326425.1|FK326425
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|20497875|gb|BQ272805.1|BQ272805
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|151411748|gb|EV281559.1|EV281559
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAAGACTGACACTGC                         ACTTTGCTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|192331285|gb|FK023782.1|FK023782
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|192301669|gb|FG997611.1|FG997611
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTA
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTA
EST: gi|6725773|gb|AW310172.1|AW310172
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|6566253|gb|AW233934.1|AW233934
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTGTGTTGAGGATCGGCTAGCTACCTTAAATAATGTCATCTTAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|21887980|gb|BQ741193.1|BQ741193
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|58022451|gb|CX709192.1|CX709192
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|58017891|gb|CX704633.1|CX704633
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|57575865|gb|CX548836.1|CX548836
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatactgtttagctgtaaataatggaattctggttatagctcttaaaattaataaaattctgctcttgcttgttaagatggttcacaataaattaactccagttaatcttaacca

- - - - - - - -  CTGAAG
- - - - - - - - - TGAAGC
- - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - AGAGCA