1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAGCCGCTTTGCTGATGCTTTACTCCGAGAGCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatttgatatattttaccaaaataatgctgtggaatatttatgttacgtctgttttctttttcttgctttattttgataaaaatattatttttcctggactatctttaactttacttaca
species | Glycine max |
transcript | GLYMA18G46830.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGEST: gi|6848327|gb|AW350617.1|AW350617
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
EST: GCTTGCCGGAGTGNCCATACCACCTGAAAGAATATATGGCCTTGGAACTG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGEST: gi|151406125|gb|EV275940.1|EV275940
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
EST: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGEST: gi|192315950|gb|FK008833.1|FK008833
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
EST: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGEST: gi|58025369|gb|CX712110.1|CX712110
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
EST: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGEST: gi|193360773|gb|FK326425.1|FK326425
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
EST: AATATATGGCCTTGGAACTG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGEST: gi|193608634|gb|FK562380.1|FK562380
genomic: AATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
EST: ACCATACCACCTGAAAGAATATATGGCCTTGGAACTG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGEST: gi|20497875|gb|BQ272805.1|BQ272805
genomic: ACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
EST: GTGACCATCCCACNTGAAAGAATATATGGCCTTGGAACTG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGEST: gi|151411748|gb|EV281559.1|EV281559
genomic: GTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
EST: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAAEST: gi|192331285|gb|FK023782.1|FK023782
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
EST: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACCG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGEST: gi|33389737|gb|CA852944.1|CA852944
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
EST: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTG GTCCTAAGGTAGAAGEST: gi|213587116|gb|DB959537.1|DB959537
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAG
EST: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTG GTCCTAAGGTAEST: gi|192331284|gb|FK023781.1|FK023781
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTA
EST: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACCG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAEST: gi|192301669|gb|FG997611.1|FG997611
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAA
EST: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTG GTCCTAAAGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGEST: gi|6725773|gb|AW310172.1|AW310172
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
EST: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGEST: gi|6566253|gb|AW233934.1|AW233934
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
EST: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGEST: gi|21887980|gb|BQ741193.1|BQ741193
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
EST: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGEST: gi|151398479|gb|EV268350.1|EV268350
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
EST: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGEST: gi|58022451|gb|CX709192.1|CX709192
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
EST: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGEST: gi|58017891|gb|CX704633.1|CX704633
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
EST: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGEST: gi|57575865|gb|CX548836.1|CX548836
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
EST: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTG GTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
genomic: GCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatt ... tttacttacaGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCCGCTTTGCTGATGCTTTACTCCGAGAGCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGggttagtatttgatatattttaccaaaataatgctgtggaatatttatgttacgtctgttttctttttcttgctttattttgataaaaatattatttttcctggactatctttaactttacttaca
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