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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

agtaagatactgtttagctgtaaataatggaattctggttatagctcttaaaattaataaaattctgctcttgcttgttaagatggttcacaataaattaactccagttaatcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT

Basic information

species Glycine max
transcript GLYMA18G46830.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46830.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G45990.1 (Arabidopsis thaliana), 3'ss of exon 7
agtaagatactgtttagctgtaaataatggaattctggttatagctcttaaaattaataaaattctgctcttgcttgttaagatggttcacaataaattaactccagttaatcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT-
              || ||  |  |  |  |  |||    |||  ||||  |  |   |  | | || |  || |    |   | ||| |||||   |  |  |   || |  ||  |||| || || || ||  | || || ||  | ||||||||||| ||||||||||| |||||| |||||| ||| || ||  
-------------gtaact-cacgttctatatatctatcaataattcttctatctg-catgact-tggtaatggtcacca--ttagtttacaatccct--atgcatttttaatttggccagTTTCGTGGAAGACAGACTCGCAACGCTGAAAAATGTCATAAAAGAGCCTGAATTAGACAAATGGAGTTTATACCTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58022185|gb|CX708926.1|CX708926
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|6848327|gb|AW350617.1|AW350617
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|151406125|gb|EV275940.1|EV275940
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|193433377|gb|FK395329.1|FK395329
EST:     AGTTCTGAAGCAGCTACNGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|193364528|gb|FK333569.1|FK333569
EST:     CCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: CCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|192315950|gb|FK008833.1|FK008833
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|58025369|gb|CX712110.1|CX712110
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|193360773|gb|FK326425.1|FK326425
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|20497875|gb|BQ272805.1|BQ272805
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|151411748|gb|EV281559.1|EV281559
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAAGACTGACACTGC                         ACTTTGCTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|192331285|gb|FK023782.1|FK023782
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|192301669|gb|FG997611.1|FG997611
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTA
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTA
EST: gi|6725773|gb|AW310172.1|AW310172
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|6566253|gb|AW233934.1|AW233934
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTGTGTTGAGGATCGGCTAGCTACCTTAAATAATGTCATCTTAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|21887980|gb|BQ741193.1|BQ741193
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|58022451|gb|CX709192.1|CX709192
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|58017891|gb|CX704633.1|CX704633
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
EST: gi|57575865|gb|CX548836.1|CX548836
EST:     AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGC                         ACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG
genomic: AGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCagtaagatac ... atcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctcttgcttgttaagatggttcacaataaattaactccagttaatcttaaccaGCTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTT
                     ttcacaataaattaa  TA-rich tract