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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctctctgtattgttaaggatgacattatgtataatatgcatacatgttttcaattatattcaatagatagtgcattgctttcacaagaactgaaattcttgtgaagacaaaacatttgtgtgacttagttcttgctttttaataacaccattgtctttgtattattttttttatctgttatcatattaaagATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACCATCGCTGCCGCACCATGGGGCTCAGCACTCATATTGCCAATCTCTTACA

Basic information

species Glycine max
transcript GLYMA17G34690.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34690.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv04s0008g01300.t01 (Vitis vinifera), 3'ss of exon 9
gtaagcctctctgtattgttaaggatgacattatgtataatatgcatacatgttttcaattatattcaatagatagtgcattgctttcacaagaactgaaattcttgtgaagacaaaacattt-gtgtgacttagttcttgctttttaataacaccattgtctttgtattattttttttatctgttatcata-ttaaagATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACCATCGCTGCCGCACCATGGGGCTCAGCACTCATATTGCCAATCTCTTACA
                                                                                                     ||||||     |  | |||||   ||  |   |  | | |   || ||||      || |  ||||| |   |  |||   ||| ||||||  | ||| || | || ||||| || || || |||||||||   || ||||||||||||||  |||| ||||| |||||||| ||||| || |||||||| || || |
----------------------------------------------------------------------------------------------gtaatgtttcttgaattaaatatacattccatgaaaagaaaatttggtgcttcaata------tttttattgtacttcctaatttccttgtcatcataactgaagGTATCTACGGGTGGTATACCAGCTCCTGACAAATTACAGCCACTTGGTACCATATCTGCTGCACCTTGGGGCTCTGCACTTATTTTGCCAATATCATATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20448765|gb|BQ252889.1|BQ252889
EST:     CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTG                         ATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
genomic: CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTGgtaagcctct ... catattaaagATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
EST: gi|16276767|gb|BI942033.1|BI942033
EST:     CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTG                         ATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGTTACC
genomic: CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTGgtaagcctct ... catattaaagATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
EST: gi|26058323|gb|CA801237.1|CA801237
EST:     CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCC--TG                         -T-GCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
genomic: CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTGgtaagcctct ... catattaaagATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
EST: gi|209717715|gb|BW671533.1|BW671533
EST:     CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTG                         ATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
genomic: CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTGgtaagcctct ... catattaaagATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
EST: gi|20075344|gb|BQ094127.1|BQ094127
EST:     GTAAAGAAACACTTGGCACCATTTTTACCTTCACACCCTGTG                         ATAGAAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
genomic: GTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTGgtaagcctct ... catattaaagATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
EST: gi|120493515|gb|EH221682.1|EH221682
EST:     CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTG                         ATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAAGCACTTGGTACC
genomic: CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTGgtaagcctct ... catattaaagATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
EST: gi|15589871|gb|BI674487.1|BI674487
EST:     CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTG                         ATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
genomic: CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTGgtaagcctct ... catattaaagATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
EST: gi|20812005|gb|BQ296483.1|BQ296483
EST:     CTATTGGTGTAAAGAAACACTTGGCACCATTTTTACCTTCACACCCTGTG                         ATAGAAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
genomic: CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTGgtaagcctct ... catattaaagATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
EST: gi|16281624|gb|BI944583.1|BI944583
EST:     CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTG                         ATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
genomic: CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTGgtaagcctct ... catattaaagATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
EST: gi|192315105|gb|FK009929.1|FK009929
EST:     CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTG                         ATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
genomic: CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTGgtaagcctct ... catattaaagATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
EST: gi|15589745|gb|BI674361.1|BI674361
EST:     CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTG                         ATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC
genomic: CTATAGGTGTAAAGAAACACTTGGCACCATTTTTACCATCACACCCTGTGgtaagcctct ... catattaaagATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaataacaccattgtctttgtattattttttttatctgttatcatattaaagATAGCAACTGGTGGAATTCCTGCCCCTGACAAACCTCAACCACTTGGTACCATCGCTGCCGCACCATGGGGCTCAGCACTCATATTGCCAATCTCTTACA
   taataac  putative branch site (score: 1)
                 tctttgtattattttt  TA-rich tract