1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaaaaacaaaaaaacactgttcttcatttgtatgatgttactaagaagagaaatacttgttttagtttgattgtctagtagtacacaacattggctgcatatttcattcacaatttcaaccaagttcgtgaactttttattgattatctataatgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCATACTCCAGGGAATATGCAGCCTTCCCAGCTCCTTGGCTCCGTGCTTCAA
species | Glycine max |
transcript | GLYMA17G34690.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAG AGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCAEST: gi|120493517|gb|EH221684.1|EH221684
genomic: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAGgtaaaaacaa ... tgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCA
EST: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAG AGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCAEST: gi|22523580|gb|BU082391.1|BU082391
genomic: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAGgtaaaaacaa ... tgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCA
EST: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAG AGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCAEST: gi|26058323|gb|CA801237.1|CA801237
genomic: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAGgtaaaaacaa ... tgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCA
EST: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAG AGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCAEST: gi|154204736|gb|EV554998.1|EV554998
genomic: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAGgtaaaaacaa ... tgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCA
EST: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAG AGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCAEST: gi|16342969|gb|BI968564.1|BI968564
genomic: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAGgtaaaaacaa ... tgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCA
EST: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAG AGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCAEST: gi|10231306|gb|BE800194.1|BE800194
genomic: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAGgtaaaaacaa ... tgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCA
EST: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAATAATAATGTACTTAAG AGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCAEST: gi|192295731|gb|FG990825.1|FG990825
genomic: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAGgtaaaaacaa ... tgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCA
EST: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAG AGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCAEST: gi|120492558|gb|EH220725.1|EH220725
genomic: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAGgtaaaaacaa ... tgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCA
EST: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAG AGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCAEST: gi|13480387|gb|BG509730.1|BG509730
genomic: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAGgtaaaaacaa ... tgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCA
EST: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAG AGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCAEST: gi|192315105|gb|FK009929.1|FK009929
genomic: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAGgtaaaaacaa ... tgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCA
EST: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAG AGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAA-CCAEST: gi|192315106|gb|FK009930.1|FK009930
genomic: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAGgtaaaaacaa ... tgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCA
EST: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAG AGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCAEST: gi|21676476|gb|BQ628827.1|BQ628827
genomic: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAGgtaaaaacaa ... tgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCA
EST: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAG AGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCAEST: gi|117557747|gb|EG702132.1|EG702132
genomic: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAGgtaaaaacaa ... tgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCA
EST: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAG AGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCAEST: gi|154204730|gb|EV554992.1|EV554992
genomic: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAGgtaaaaacaa ... tgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCA
EST: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAG AGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCA
genomic: TTGCTGAGATTGAGAAAGGAAATGCTGACATTAACAACAATGTACTTAAGgtaaaaacaa ... tgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCA
cacaatttcaaccaagttcgtgaactttttattgattatctataatgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCATACTCCAGGGAATATGCAGCCTTCCCAGCTCCTTGGCTCCGTGCTTCAA
tattgat putative branch site (score: 3)
aactttttattgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaacaaaaaaacactgttcttcatttgtatgatgttactaagaagagaaatacttgttttagtttgattgtctagtagtacacaacattggctgcatatttcattcacaatttcaaccaagttcgtgaactttttattgattatctataatgttctacagAGCGCCCCTCATCCACCATCACTGCTCATGGCTGATGCATGGACAAAACCATACTCCAGGGAATATGCAGCCTTCCCAGCTCCTTGGCTCCGTGCTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC