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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATTGTCTCTGTTGGAACTGACGCCAAGGGTAACATTAATATAGAAGAATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttgcttcctatagaatcttactcatattatttactctataccagataattgagggtattgtcaaacctaggcatttttttacattagtttggttttaatttaaattgcag

Basic information

species Glycine max
transcript GLYMA17G34690.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34690.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g51410.2 (Oryza sativa), 5'ss of exon 6
GAAAATTGTCTCTGTTGGAACTGACGCCAAGGGTAACATTAATATAGAAGAATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttgcttcctatagaatcttactcatattatttactctatac-cagataattgagggtattgtcaaacctaggcatttttttacattagtttggttttaatttaaattgcag
||| || ||  |||||||||||||  |||| ||||||||||| || || || ||||| || ||||| ||| || | |||||||||||  |||| ||||||||||    || | | | |    | | | |  ||| |||||     |   ||| || |   | | | || | |     ||  ||| |   ||    ||   | |||| |          
GAAGATCGTTGCTGTTGGAACTGATTCCAAAGGTAACATTAACATCGAGGAGTTGAGGAAAGCTGCTGAAGCAAACAAGGACAACTTGGCTGCTCTTATGgtac----tgttccttttgctctgtaaatgttatcatttatcaggtcttcaggtagtaatgtggaatgcctat----ggtctttctggtcaactattcactgttaaat----------

upper sequence: GLYMA17G34690.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g40940.1 (Oryza sativa), 5'ss of exon 7
GAAAATTGTCTCTGTTGGAACTGACGCCAAGGGTAACATTAATATAGAAGAATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttgcttcctatagaatcttactcatattatttactctataccagataattgagggtattgtcaaacctaggcatttttttacattagtttggttttaatttaaattgcag
||| |||||  |||||||||||||  |||| ||||||||||| || || || ||||| || ||||| ||| || | |||||||||||  |||| ||||||||||    || |   | |    | | | |  ||| |||||     |          ||   ||| |||  ||         | | |    | |  |   ||     ||||||     
GAAGATTGTTGCTGTTGGAACTGATTCCAAAGGTAACATTAACATCGAGGAGTTGAGGAAAGCTGCTGAAGCAAACAAGGACAACTTGGCTGCTCTTATGgtac----tgttctttttgctctgtaaatgttatcatttatctggtctt------ctggtagtactgtggaatgcctatggtctctctggtcaact--attcactgttaaat-----

upper sequence: GLYMA17G34690.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G104310_T03 (Zea mays), 5'ss of exon 7
GAAAATTGTCTCTGTTGGAACTGACGCCAAGGGTAACATTAATATAGAAGAATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttgcttcctatagaatcttactcatattatttactctataccagataattgagggtattgtcaaacctaggcatttttttacattagtttggttttaatttaaattgcag
||| |||||  ||||||||||||| |||||||||||||| || || || |||||||| || ||||| ||| || | |||||||||||  |||| || |||||||  ||||||     | ||   ||| || ||| |||| || |  |  | |||  ||  |  ||| ||   ||   |  |||||  | |  | | ||   || || ||        
GAAGATTGTTGCTGTTGGAACTGATGCCAAGGGTAACATAAACATCGAGGAATTGAGGAAAGCTGCAGAAGCAAACAAGGACAACTTGGCTGCTCTGATGgtact-cttgctct---tggacatttaatc-tatcattt-ctatg-agtatatacctggcg--attctcttgcccgtgactttttgaaaaaaaatctgacctttatgta--------

upper sequence: GLYMA17G34690.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G26080.1 (Arabidopsis thaliana), 5'ss of exon 7
GAAAATTGTCTCTGTTGGAACTGACGCCAAGGGTAACATTAATATAGAAGAATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttgcttcctatagaatcttactcatattatttactctataccagataattgagggtattgtcaaacctaggcatttttttacattagtttggttttaatttaaattgcag
|||||||||  | ||||||||||| ||||| || |||||||| || ||||| ||||| || || |||||| |  | |||||||||||  |||| |||||||||            |||      |||||  | | ||  ||| || |  | | |||    |  | | |     | |  || ||| | |   ||       ||   ||| |||   ||
GAAAATTGTTGCCGTTGGAACTGATGCCAAAGGAAACATTAACATCGAAGAGTTGAGGAACGCCGCCGAAGCCAACAAGGACAACTTGGCTGCTCTTATGgtatg----------tat------ttacttctttcatc-actatagatgaaacaat----gtcacttttgggtcaatccactttctaattcta---caacttctgtttgaatattag

upper sequence: GLYMA17G34690.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0008g01300.t01 (Vitis vinifera), 5'ss of exon 7
GAAAATTGTCTCTGTTGGAACTGACGCCAAGGGTAACATTAATATAGAAGAATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttgcttcctatagaatcttactcatattatttactctataccagataattgagggtattgtcaaacctaggcatttttttacattagtttggttttaatttaaattgcag
|||||||||  ||||||||||||| |||||||| ||||| || || ||||| || || |||||||| ||| || ||||||| ||| ||||||| |||||||||     ||     |  ||  |     |  | | |  |  |   ||  | ||| |  || || |  |  |   |        ||| |                             
GAAAATTGTTGCTGTTGGAACTGATGCCAAGGGAAACATCAACATTGAAGAGTTAAGGAAGGCTGCTGAAGCAAATAAGGAAAACCTATCTGCTCTTATGgta-----tgtaggttggagggtagggttggtgtgagatcatgcctatgaaata-tcaagtgt-tcattgattttgatttgaatttcag----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20448765|gb|BQ252889.1|BQ252889
EST:     CTTATCTGCACTTATG                         GTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
genomic: CTTATCTGCACTTATGgtacaacttg ... taaattgcagGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
EST: gi|16276767|gb|BI942033.1|BI942033
EST:     AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATG                         GTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
genomic: AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttg ... taaattgcagGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
EST: gi|17519697|gb|BM188739.1|BM188739
EST:     AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATG                         GTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
genomic: AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttg ... taaattgcagGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
EST: gi|209717715|gb|BW671533.1|BW671533
EST:     AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATG                         GTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
genomic: AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttg ... taaattgcagGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
EST: gi|209728382|gb|BW652039.1|BW652039
EST:     AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATG                         GTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
genomic: AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttg ... taaattgcagGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
EST: gi|15589871|gb|BI674487.1|BI674487
EST:     AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATG                         GTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
genomic: AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttg ... taaattgcagGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
EST: gi|15589745|gb|BI674361.1|BI674361
EST:     GAAACACATAAGGACAACTTATCTGCACTTATG                         GTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
genomic: GAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttg ... taaattgcagGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT