1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TCCCCTTCACTGCTGCATCTCTTGCACCAGAAGTTCAGAGTGCGATTCCTTCTGGATTAGTTAGGAAGAGCCCTTATCTGACACACTCTATCTTTAACATgtatgtcccttttcacaaactttgaattcatgtgattatgttatggaaacttacatcaattttatttgtctcttcatag
species | Glycine max |
transcript | GLYMA17G34690.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTGGATTAGTTAGGAAGAGCCCTTATCTGACACACTCTATCTTTAACAT GTACCAAACTGAGCATGAGTTGCTTAGGTACTTGTATAAGCTACAATCAAAEST: gi|17400446|gb|BM177228.1|BM177228
genomic: TCTGGATTAGTTAGGAAGAGCCCTTATCTGACACACTCTATCTTTAACATgtatgtccct ... ctcttcatagGTACCAAACTGAGCATGAGTTGCTTAGGTACTTGTATAAGCTACAATCAAA
EST: TCTGGATTAGTTAGGAAGAGCCCTTATCTGACACACTCTATCTTTAACAT GTACCAAACTGAGCATGAGTTGCTTAGGTACTTGTATAAGCTACAATCAAAEST: gi|23064257|gb|BU579030.1|BU579030
genomic: TCTGGATTAGTTAGGAAGAGCCCTTATCTGACACACTCTATCTTTAACATgtatgtccct ... ctcttcatagGTACCAAACTGAGCATGAGTTGCTTAGGTACTTGTATAAGCTACAATCAAA
EST: TCTGGATTAGTTAGGAAGAGCCCTTATCTGACACACTCTATCTTTAACAT GTACCAAACTGAGCATGAGTTGCTTAGGTACTTGTATAAGCTACAATCAAA
genomic: TCTGGATTAGTTAGGAAGAGCCCTTATCTGACACACTCTATCTTTAACATgtatgtccct ... ctcttcatagGTACCAAACTGAGCATGAGTTGCTTAGGTACTTGTATAAGCTACAATCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCCTTCACTGCTGCATCTCTTGCACCAGAAGTTCAGAGTGCGATTCCTTCTGGATTAGTTAGGAAGAGCCCTTATCTGACACACTCTATCTTTAACATgtatgtcccttttcacaaactttgaattcatgtgattatgttatggaaacttacatcaattttatttgtctcttcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA