1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtacaacttgcttcctatagaatcttactcatattatttactctataccagataattgagggtattgtcaaacctaggcatttttttacattagtttggttttaatttaaattgcagGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATTTGCAAGATTATTCATGATAATGGAGGCCAAGTATATATGGATGGTGCCA
species | Glycine max |
transcript | GLYMA17G34690.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTATCTGCACTTATG GTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATTEST: gi|16276767|gb|BI942033.1|BI942033
genomic: CTTATCTGCACTTATGgtacaacttg ... taaattgcagGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
EST: AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATG GTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATTEST: gi|17519697|gb|BM188739.1|BM188739
genomic: AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttg ... taaattgcagGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
EST: AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATG GTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATTEST: gi|209717715|gb|BW671533.1|BW671533
genomic: AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttg ... taaattgcagGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
EST: AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATG GTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATTEST: gi|209728382|gb|BW652039.1|BW652039
genomic: AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttg ... taaattgcagGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
EST: AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATG GTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATTEST: gi|15589871|gb|BI674487.1|BI674487
genomic: AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttg ... taaattgcagGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
EST: AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATG GTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATTEST: gi|15589745|gb|BI674361.1|BI674361
genomic: AATTGAGAAAGGCTGCCGAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttg ... taaattgcagGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
EST: GAAACACATAAGGACAACTTATCTGCACTTATG GTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
genomic: GAAACACATAAGGACAACTTATCTGCACTTATGgtacaacttg ... taaattgcagGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATT
tattgtcaaacctaggcatttttttacattagtttggttttaatttaaattgcagGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATTTGCAAGATTATTCATGATAATGGAGGCCAAGTATATATGGATGGTGCCA
ttttaat putative branch site (score: 3)
atttttttacattagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaacttgcttcctatagaatcttactcatattatttactctataccagataattgagggtattgtcaaacctaggcatttttttacattagtttggttttaatttaaattgcagGTAACATATCCTTCAACTCACGGTGTTTATGAGGAAGGTATTGACGAAATTTGCAAGATTATTCATGATAATGGAGGCCAAGTATATATGGATGGTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG