1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtttgtctcattttatagattacatgcatttctttcaacctttttttcctagttagtatcataatactgtgattctgtatatgatccttggtttaactttgactcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAATTCATCATTGACCTGAGAGGCTTTAAG
species | Glycine max |
transcript | GLYMA17G34690.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAG AATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAAEST: gi|16276767|gb|BI942033.1|BI942033
genomic: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGgtttgtctca ... actcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAA
EST: CATCAAAGATAGCCATCTTGATTGCAAACTACATGCCAAAACGATCGGAG AATTAT-ATCCCGTTCTTTTCCGTGGAGTCAEST: gi|26058323|gb|CA801237.1|CA801237
genomic: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGgtttgtctca ... actcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCA
EST: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAG AATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAAEST: gi|154204736|gb|EV554998.1|EV554998
genomic: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGgtttgtctca ... actcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAA
EST: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAG AATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAAEST: gi|209717715|gb|BW671533.1|BW671533
genomic: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGgtttgtctca ... actcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAA
EST: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAG AATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAAEST: gi|20075344|gb|BQ094127.1|BQ094127
genomic: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGgtttgtctca ... actcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAA
EST: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAG AATTATTA-CCCGGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAEST: gi|120493515|gb|EH221682.1|EH221682
genomic: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGgtttgtctca ... actcctacagAATTATTATCCCG-TTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGA
EST: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAG AATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAAEST: gi|10231306|gb|BE800194.1|BE800194
genomic: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGgtttgtctca ... actcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAA
EST: AAACGATTGGAG AATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAAEST: gi|192295731|gb|FG990825.1|FG990825
genomic: AAACGATTGGAGgtttgtctca ... actcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAA
EST: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAG AATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAAEST: gi|13480387|gb|BG509730.1|BG509730
genomic: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGgtttgtctca ... actcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAA
EST: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAG AATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAAEST: gi|20812005|gb|BQ296483.1|BQ296483
genomic: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGgtttgtctca ... actcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAA
EST: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAG AATTATTA-CCCGGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAEST: gi|16281624|gb|BI944583.1|BI944583
genomic: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGgtttgtctca ... actcctacagAATTATTATCCCG-TTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGA
EST: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAG AATTATTATCCCGTTCTTTTCCGTGGAGT-AATGGAACAGTTGCTCATGAAEST: gi|192315105|gb|FK009929.1|FK009929
genomic: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGgtttgtctca ... actcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAA
EST: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAG AATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAAEST: gi|192315106|gb|FK009930.1|FK009930
genomic: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGgtttgtctca ... actcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAA
EST: AAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAG AATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAAEST: gi|15589745|gb|BI674361.1|BI674361
genomic: AAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGgtttgtctca ... actcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAA
EST: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAG AATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAAEST: gi|117557747|gb|EG702132.1|EG702132
genomic: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGgtttgtctca ... actcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAA
EST: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAG AATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAAEST: gi|154204730|gb|EV554992.1|EV554992
genomic: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGgtttgtctca ... actcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAA
EST: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAG AATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAA
genomic: CATCAAAGATAGCCATTTTGAATGCAAACTACATGGCAAAACGATTGGAGgtttgtctca ... actcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAA
tatcataatactgtgattctgtatatgatccttggtttaactttgactcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAATTCATCATTGACCTGAGAGGCTTTAAG
ctcctac CT-rich tract
tttaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtctcattttatagattacatgcatttctttcaacctttttttcctagttagtatcataatactgtgattctgtatatgatccttggtttaactttgactcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAATTCATCATTGACCTGAGAGGCTTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG