Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAAGCTGAATGCAACAACTGAAATGATGCCTGTGACATGGCCCAGCTTTACTGATATTCACCCTTTTGCACCAGTTGACCAGGCTCAAGGTTATCAGgtaattctatgtttaaataatcttacaacaattatgactcaaagaaattcacatatatatactgttgcgtgcctgaaaatatgggatagaagtcgtgttttctttgtctaaacaatcaaatctggtatcag

Basic information

species Glycine max
transcript GLYMA17G34690.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34690.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G33010.1 (Arabidopsis thaliana), 5'ss of exon 5
AATGAAGCTGAATGCAACAACTGAAATGATGCCTGTGACATGGCCCAGCTTTACTGATATTCACCCTTTTGCACCAGTTGACCAGGCTCAAGGTTATCAGgtaattctatgtttaaataatcttacaacaattatgactcaaagaaattcacatatatatactgttgcgtgcctgaaaatatgggatagaagtcgtgttttctttgtctaaacaatcaaatctggtatcag
 ||||| || ||||||||||||||||||||||| || |||||||| || || ||||| |||||||||||||| || ||||| || || |||||||||||||| | |   | | |  ||    | |    |  | ||| | | | |  |  |||   |  |  | |   || |      || | |                                               
GATGAAACTAAATGCAACAACTGAAATGATGCCAGTCACATGGCCAAGTTTCACTGACATTCACCCTTTTGCTCCTGTTGAACAAGCACAAGGTTATCAGgttagtgactttcttgat----tcatctgaggtctgatttagaaagttgaacaatgaactgatatcttgtccacatgtatgtag-----------------------------------------------

upper sequence: GLYMA17G34690.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G26080.1 (Arabidopsis thaliana), 5'ss of exon 5
AATGAAGCTGAATGCAACAACTGAAATGATGCCTGTGACATGGCCCAGCTTTACTGATATTCACCCTTTTGCACCAGTTGACCAGGCTCAAGGTTATCAGgtaattctatgtttaaataatcttacaacaattatgactcaaagaaattcacatatatatactgttgcgtgcctgaaaatatgggatagaagtcgtgttttctttgtctaaacaatcaaatctggtatcag
 |||||  ||||||| || |||||||||||||| || |||||||| || || ||  | || ||||||||||| || ||||| || || |||||||||||||| |  | |  | |   | || |  |        |||||   ||||||| |  ||  ||     ||   ||  ||| ||  |                                                 
GATGAAATTGAATGCCACCACTGAAATGATGCCAGTCACATGGCCAAGTTTCACCAACATGCACCCTTTTGCTCCTGTTGAACAAGCCCAAGGTTATCAGgtgaggccacatatt--tgatttacc--------tgact---agaaatttaactacgtactgaattttttgtttgacaacttatag---------------------------------------------

upper sequence: GLYMA17G34690.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0008g01300.t01 (Vitis vinifera), 5'ss of exon 5
AATGAAGCTGAATGCAACAACTGAAATGATGCCTGTGACATGGCCCAGCTTTACTGATATTCACCCTTTTGCACCAGTTGACCAGGCTCAAGGTTATCAGgtaatt--ctatgtttaaataatcttacaacaattatgactcaaagaaattcacatatatatactgttgcgtgcctgaaaatatgggatag-aagtcgtgttttctttgtctaaacaatcaaatctggtatcag
||||||  |||||||||||||||| |||||||| |||||||||||  ||||||| ||||||||||||||||| ||   ||| ||||| || |||||||||||| ||  | |  |||   | | ||   |   |  |||  |         |  | |  ||  |||      |   ||| | | |  | |    | |  || ||| |||  |||                     
AATGAAATTGAATGCAACAACTGAGATGATGCCGGTGACATGGCCTGGCTTTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGgtagttaccaacattttctttacctggaagttac-atg-tttgtgctgtctttcttgcattaactagcaaat---tgacattgtttgctgttgaattatgattttttttgctag--------------------

upper sequence: GLYMA17G34690.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0016g02280.t01 (Vitis vinifera), 5'ss of exon 6
AATGAAGCTGAATGCAACAACTGAAATGATGCCTGTGACATGGCCCAGCTTTACTGATATTCACCCTTTTGCACCAGTTGACCAGGCTCAAGGTTATCAGgtaattctatgtttaaataatcttacaacaattatgactcaaagaaattcacatatatatactgttgcgtgcctgaaaatatgggatagaagtcgtgttttctttgtctaaacaatcaaatctggtatcag
 |||||  |||||||||||||||| |||||||| ||||| ||||| |||||| || | || ||||||||||| ||  ||||||| || || || |||||||||| |           |||  ||     |||| ||| ||    | || ||||||||       |     | | ||    |     |          ||||| || ||| |                    
TATGAAATTGAATGCAACAACTGAGATGATGCCAGTGACTTGGCCTAGCTTTGCTAACATCCACCCTTTTGCTCCTATTGACCAAGCCCAGGGGTATCAGgtaact-----------taaatttcttgaaattctgattct---atatccacatataagagtaatccaaggtcagacttcacccattcactcataaattttcattttcttag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17519697|gb|BM188739.1|BM188739
EST:     TTACTGATATTCACCCTTTTGCACCAGTTGACCAGGCTCAAGGTTATCAG                         GAAATGTTCAATAATTTGGGTGAACTGTTGTGCACCATCACTGGGTTTGAC
genomic: TTACTGATATTCACCCTTTTGCACCAGTTGACCAGGCTCAAGGTTATCAGgtaattctat ... ctggtatcagGAAATGTTCAATAATTTGGGTGAACTGTTGTGCACCATCACTGGGTTTGAC
EST: gi|209728382|gb|BW652039.1|BW652039
EST:     TTACTGATATTCACCCTTTTGCACCAGTTGACCAGGCTCAAGGTTATCAG                         GAAATGTTCAATAATTTGGGTGAACTGTTGTGCACCATCACTGGGTTTGAC
genomic: TTACTGATATTCACCCTTTTGCACCAGTTGACCAGGCTCAAGGTTATCAGgtaattctat ... ctggtatcagGAAATGTTCAATAATTTGGGTGAACTGTTGTGCACCATCACTGGGTTTGAC