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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCGATTCTTCCGGAAAGACCGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGGCTACCAGCAACATTTGCACTGCTCAGgtaaactacttttgattttttggtagttcaatcatttttagtcattggctttggcgtgcaaaattgcaaaagctattaagaacttaaatatccaatattt...

Basic information

species Glycine max
transcript GLYMA17G34690.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34690.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g40940.1 (Oryza sativa), 5'ss of exon 1
TGTCGATTCTTCCGGAAAGACCGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGGCTACCAGCAACATTTGCACTGCTCAGgtaaactacttttgattttttggtagttcaatcatttttagtcattggctttggcgtgcaaaattgcaaaagctattaagaacttaaatatccaatattt------------
 ||||||||   ||| ||| ||||  |  ||||||| ||||| ||  |||||||||| ||| |  | |||||||| ||||||||||| |||||||| |||||| |||||             ||    |||  | |    | ||  | |   ||||   | |  | | |    | |      |   | |    || |||             
CGTCGATTCCAGCGGCAAGCCCGCGCTCCGGATGGCGATGCAGACCCGGGAGCAGCACATCCGCCGCGACAAGGCCACCAGCAACATCTGCACTGCCCAGgtacactacacgcacgccacccgttcaccaa--aatgcctgacagcgacagaggcgataagagatacgatgaatttactagtcggtagtgataaagattggctgtggtgtag

upper sequence: GLYMA17G34690.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g51410.2 (Oryza sativa), 5'ss of exon 1
TGTCGATTCTTCCGGAAAGACCGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGGCTACCAGCAACATTTGCACTGCTCAGgtaaactacttttgattttttggtagttcaatcatttttagtcattggctttggcgtgcaaaattgcaaaagctattaagaacttaaatatccaatattt----------------------------------------------------
 ||||||||   ||| ||| ||||  |  ||||||| ||||| ||  |||||||||| ||| |  | |||||||| ||||||||||| |||||||| |||||| ||  |     |       |     |  |||     | |     | |   |||    | |    || || ||  | ||| |||   | | |  | ||                                                    
CGTCGATTCCAGCGGCAAGCCCGCGCTCCGGATGGCGATGCAGACCCGGGAGCAGCACATCCGCCGCGACAAGGCCACCAGCAACATCTGCACTGCCCAGgtacac-gcacgcaacgcac--gccacccgttcacca--aattgccagat--agcgacagagacgataagagatacgatgaatttagtaaacaagcactttttcgtagaggagtcagtagtgataaagatgcctgtggtttatactctgtag

upper sequence: GLYMA17G34690.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G33010.1 (Arabidopsis thaliana), 5'ss of exon 1
TGTCGATTCTTCCGGAAAGACCGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGGCTACCAGCAACATTTGCACTGCTCAGgtaaactacttttgattttttggtagttcaat---catttttagtcattggct---ttggcgtgcaaaattgcaaaagctattaagaacttaaatatccaatattt--------------
||| |||||||| ||||||   ||| || | ||||| ||||| ||||| || |||||||| ||||||||||| || || |||||||| || |||||||| ||||  ||||| | | | | || |   ||| |   || ||||    ||| | |   |  |    | | ||   |       | | |    | | ||    || |||              
TGTTGATTCTTCAGGAAAGCAAGCTCTGCGTATGGCTATGCAGACTAGAGAACAGCATATTAGGAGGGACAAAGCCACTAGCAACATCTGTACTGCTCAAgtaa-ttacttcttagtatctgattactcatttttcacttttcactattagttcgttcagataactagatgatatgttgattcatgttgatgagtacttcatcttttcattttcctgcag

upper sequence: GLYMA17G34690.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G26080.1 (Arabidopsis thaliana), 5'ss of exon 1
TGTCGATTCTTCCGGAAAGACCGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGGCTACCAGCAACATTTGCACTGCTCAGgtaaa--ctacttttgattttttggtagttcaatcatttttagt-cattggctttggcgtgcaaa--attgcaaaagctattaagaacttaaatatccaatattt------------------------------------------------------------
||| ||||||||||| |||   |||||| | ||||| ||||| |||||||| ||||||||| | ||||| || |||||||||||||| || || |||||||||||     |||   | | | | | | ||   |  | | ||   | ||| || |  |    ||   ||  |||||||    |  |    |  || | |                                                                  
TGTTGATTCTTCCGGGAAGCAAGCTTTGCGTATGGCTATGCAGACTAGGGAACAGCATATCCGCAGGGATAAAGCTACCAGCAACATCTGTACCGCTCAGgtaaaaatggcttcaaactctataggatttatgtagtgtataccgctttgactattactgataagtgataacaaaagcgggaagaattagaggtaccgagagagcagtaccatattttacatcttcaaactattttgctattgattatcgttttctacattgtag

upper sequence: GLYMA17G34690.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv11s0016g02280.t01 (Vitis vinifera), 5'ss of exon 2
TGTCGATTCTTCCGGAAAGACCGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGGCTACCAGCAACATTTGCACTGCTCAGgtaaactacttttgattttttggtagttca-atcatttttagtcattggctttggcgtgcaaaattgcaaaagctattaagaacttaaatatccaatattt-
 || |||||    |||||| | ||| || | ||||||||||| || |||||||| |||||| | |||||||| || |||||||| || ||||||||||||||    ||  ||   |  ||   |  || | ||||  || |    |    |||    |||  | || ||      || |   |  |||| |    |  | | 
CGTTGATTCGAGTGGAAAGCCTGCTCTGCGAATGGCAATGCAGACAAGGGAGCAACATATCCGAAGGGACAAAGCCACCAGCAATATCTGCACTGCTCAGgtttgttatgttgcttccttaatttctttatatcaggttcataggtcaaatttaat-tgcctagtt-catccttaatgatctagctaaagacgttacttctc

upper sequence: GLYMA17G34690.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0008g01300.t01 (Vitis vinifera), 5'ss of exon 1
TGTCGATTCTTCCGGAAAGACCGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGGCTACCAGCAACATTTGCACTGCTCAGgtaaactacttttgattttttggtagttcaatcatttttagtcattggctttggcgtgcaaaattgcaaaagctattaa--gaacttaaatatccaatattt-----
||| ||| |||| |||||| | ||| || | ||||||||||| || || || || |||||| |||||||||||||||| |||||||| ||||||||||||||| |        |||| ||   | |  |||||| |||  ||  ||   || || |       |    || |   || |  |  |||   | |    || ||     
TGTTGATGCTTCAGGAAAGCCTGCTCTGCGTATGGCAATGCAGACGAGAGAACAACATATCCGGAGGGACAAGGCTACGAGCAACATATGCACTGCTCAGgtacag------agattattcaat-gcccaatcaatttatgtttttcatttaggggctgtttttcattaagggggtttattggcctttttttttttttaattaaaaa

upper sequence: GLYMA17G34690.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ10519 (Selaginella moellendorffii), 5'ss of exon 1
TGTCGATTCTTCCGGAAAGACCGCTTTGAGGATGGCAATGCAAACTAGGGAGCAGCATATCAGGAGGGACAAGGCTACCAGCAACATTTGCACTGCTCAGgtaaactacttttgattttttggtagttcaatcatttt-tagtcattggctttggcgtgcaaaattgcaaaagctattaagaacttaaatatccaatattt
||| ||| |    |||||| | ||  |  | |||||  |||||||| | |||||||| || ||  | |||||||| ||||||||||||||||| || ||||||   |  ||||| |||||    |  |   |   ||  |  ||    | |||  | ||     ||  |                                
TGTTGATGCCAATGGAAAGCCGGCACTCCGTATGGCTTTGCAAACTCGTGAGCAGCACATAAGACGTGACAAGGCCACCAGCAACATTTGCACGGCCCAGgta---tggttttggtttttgttcatatgtgttgcttcatcatctcatgatttctcttgtgttgttatag-------------------------------