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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattgctgtcttctattttttctaaataattgtctttggttcaacttgttttggagaatttgtttttttgttcggctcctgagagcctttgataa...

Basic information

species Glycine max
transcript GLYMA16G22530.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193624234|gb|FK574254.1|FK574254
EST:     GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATG                         AGCCGCCAGAGCAGCTGTATGCCTCCC
genomic: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattg ... gtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCC
EST: gi|254315655|gb|GR825464.1|GR825464
EST:     GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATC-AATG                         AGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
genomic: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattg ... gtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
EST: gi|23052390|gb|BU577147.1|BU577147
EST:     GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATG                         AGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
genomic: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattg ... gtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
EST: gi|254336879|gb|GR843058.1|GR843058
EST:     GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATG                         AGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
genomic: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattg ... gtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
EST: gi|193447589|gb|FK413210.1|FK413210
EST:     GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATG                         AGCCGCCAGAGCAGCTGTATGCCTCCCAACTTT
genomic: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattg ... gtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTT
EST: gi|193582906|gb|FK542334.1|FK542334
EST:     GTTTGGTGGACTTGGAGTTGGTAGCCTAGCGGTTCCAAATAGATCAAATG                         AGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
genomic: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattg ... gtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
EST: gi|6666552|gb|AW278003.1|AW278003
EST:     GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATG                         AGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
genomic: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattg ... gtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
EST: gi|4313901|gb|AI461020.1|AI461020
EST:     GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATG                         AGCCGNCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
genomic: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattg ... gtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattgctgtcttctattttttctaaataattgtctttggttcaacttgttttggagaatttgtttttttgttcggctcctgagagcctttgataa

- - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA