1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tattgcatctgatctgatacacatatcatacctgtgtaacatagcttgtgactaatatgactcatactgtcattattgatggtgaacattgtatttgtagCTGGAGGTGCTCAAAATAACCCCAGAAGGTCGTTGACTACTGGTGTGGATGCCAGACAGCAAGGACCTACTGGCTTAGGTGGGCTTGGTCTGCCAGACCT
species | Glycine max |
transcript | GLYMA16G22530.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCCTTACCCAATACTAACCCGCTTCCAAATCCTTGGTCCTCTACGGGAA CTGGAGGTGCTCAAAATAACCCCAGAAGGTEST: gi|193440352|gb|FK410447.1|FK410447
genomic: TCCCTTACCCAATACTAACCCGCTTCCAAATCCTTGGTCCTCTACGGGAAgtaagttctg ... gtatttgtagCTGGAGGTGCTCAAAATAACCCCAGAAGGT
EST: TCCCTTACCCAATACTAACCCGCTTCCAAATCCTTGATCCTCTACGGGAA CTGGAGGTGCTCAAAATAACCCCAGAAGGTCGTTGACTACTGGTGTGGATGEST: gi|254336879|gb|GR843058.1|GR843058
genomic: TCCCTTACCCAATACTAACCCGCTTCCAAATCCTTGGTCCTCTACGGGAAgtaagttctg ... gtatttgtagCTGGAGGTGCTCAAAATAACCCCAGAAGGTCGTTGACTACTGGTGTGGATG
EST: AATACTAACCCGCTTCCAAATCCTTGGTCCTCTACGGGAA CTGGAGGTGCTCAAAATAACCCCAGAAGGTCGTTGACTACTGGTGTGGATGEST: gi|18041069|gb|BM309363.1|BM309363
genomic: AATACTAACCCGCTTCCAAATCCTTGGTCCTCTACGGGAAgtaagttctg ... gtatttgtagCTGGAGGTGCTCAAAATAACCCCAGAAGGTCGTTGACTACTGGTGTGGATG
EST: TCCCTTACCCAATACTAACCCGCTTCCAAATCCTTGGTCCTCTACGGGAA CTGGAGGTGCTCAAAATAACCCCAGAAGGTCGTTGACTACTGGTGTGGATGEST: gi|13563218|gb|BG551438.1|BG551438
genomic: TCCCTTACCCAATACTAACCCGCTTCCAAATCCTTGGTCCTCTACGGGAAgtaagttctg ... gtatttgtagCTGGAGGTGCTCAAAATAACCCCAGAAGGTCGTTGACTACTGGTGTGGATG
EST: TCCCTTACCCAATACTAACCCGCTTCCAAATCCTTGGTCCTCTACGGGAA CTGGAGGTGCTCAAAATAACC
genomic: TCCCTTACCCAATACTAACCCGCTTCCAAATCCTTGGTCCTCTACGGGAAgtaagttctg ... gtatttgtagCTGGAGGTGCTCAAAATAACC
ttgtgactaatatgactcatactgtcattattgatggtgaacattgtatttgtagCTGGAGGTGCTCAAAATAACCCCAGAAGGTCGTTGACTACTGGTGTGGATGCCAGACAGCAAGGACCTACTGGCTTAGGTGGGCTTGGTCTGCCAGACCT
attattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgcatctgatctgatacacatatcatacctgtgtaacatagcttgtgactaatatgactcatactgtcattattgatggtgaacattgtatttgtagCTGGAGGTGCTCAAAATAACCCCAGAAGGTCGTTGACTACTGGTGTGGATGCCAGACAGCAAGGACCTACTGGCTTAGGTGGGCTTGGTCTGCCAGACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - gcatctg
- - - - - - - - atacaca
- - - - - - - - - - - - - catacct
- - - - - - - - - - - - - - - - - - - - - -gcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggtg