1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agtttggtggtgacttttttggatgatacactgccatttgactataaacatgtaattttaatagttcattgaaattacgatagagtgattttattggtagGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATG
species | Glycine max |
transcript | GLYMA16G22530.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGAATCTGGTCAAACTGGCGGAGGCACTG GACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACEST: gi|23052390|gb|BU577147.1|BU577147
genomic: GGAATCTGGTCAAACTGGCGGAGGCACTGgtatgcaaga ... ttattggtagGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGAC
EST: GGAATCTGGTCAAACTGGCGGAGGCACTG GACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACEST: gi|254336879|gb|GR843058.1|GR843058
genomic: GGAATCTGGTCAAACTGGCGGAGGCACTGgtatgcaaga ... ttattggtagGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGAC
EST: GGAATCTGGTCAAACTGGCGGAGGCACTG GACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACEST: gi|193447589|gb|FK413210.1|FK413210
genomic: GGAATCTGGTCAAACTGGCGGAGGCACTGgtatgcaaga ... ttattggtagGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGAC
EST: GGCGGGGGCACTG GACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACEST: gi|193561485|gb|FK518996.1|FK518996
genomic: GGCGGAGGCACTGgtatgcaaga ... ttattggtagGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGAC
EST: GGAATCTGGTCAAACTGGCGGAGGCACTG GACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGNGGACEST: gi|193582906|gb|FK542334.1|FK542334
genomic: GGAATCTGGTCAAACTGGCGGAGGCACTGgtatgcaaga ... ttattggtagGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGAC
EST: GGAATCTGGTCAAACTGGCGGAGGCACTG GACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACEST: gi|208049106|gb|GD845447.1|GD845447
genomic: GGAATCTGGTCAAACTGGCGGAGGCACTGgtatgcaaga ... ttattggtagGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGAC
EST: GGAATCTGGTCAAACTGGCGGAGGCACTG GACCAATGAACAACTTGGGATTGGAEST: gi|207809958|gb|GD781934.1|GD781934
genomic: GGAATCTGGTCAAACTGGCGGAGGCACTGgtatgcaaga ... ttattggtagGACCAATGAACAACTTGGGATTGGA
EST: GGAATCTGGTCAAACTGGCGGAGGCACTG GACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGAEST: gi|6666552|gb|AW278003.1|AW278003
genomic: GGAATCTGGTCAAACTGGCGGAGGCACTGgtatgcaaga ... ttattggtagGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGA
EST: GGAATCTGGTCAAACTGGCGGAGGCACTG GACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACEST: gi|4313901|gb|AI461020.1|AI461020
genomic: GGAATCTGGTCAAACTGGCGGAGGCACTGgtatgcaaga ... ttattggtagGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGAC
EST: GGAATCTGGTCAAACTGGCGGAGGCACTG GACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGAC
genomic: GGAATCTGGTCAAACTGGCGGAGGCACTGgtatgcaaga ... ttattggtagGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGAC
aaacatgtaattttaatagttcattgaaattacgatagagtgattttattggtagGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATG
ttttaat putative branch site (score: 3)
ttttatt putative PPT
tgtaattttaatagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtttggtggtgacttttttggatgatacactgccatttgactataaacatgtaattttaatagttcattgaaattacgatagagtgattttattggtagGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - tggtggt
- - - - - - - - - -tggatga
- - - - - - - - - - - - - - cactgcc
- - - - - - - - - - - - - - - - - - - - - - - - catgtaa