1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaatggacaaaaaatgccccccaaaacatagggacctaggtattatttacctaaattttatactctgctcagcctctcactgactttgttgtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATTAGAGCTCTTATCGCCACTTCAGG
species | Glycine max |
transcript | GLYMA16G22530.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATG AGCCGCCAGAGCAGCTGTATGCCTCCCEST: gi|254315655|gb|GR825464.1|GR825464
genomic: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattg ... gtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCC
EST: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATC-AATG AGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGEST: gi|23052390|gb|BU577147.1|BU577147
genomic: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattg ... gtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
EST: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATG AGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGEST: gi|254336879|gb|GR843058.1|GR843058
genomic: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattg ... gtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
EST: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATG AGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGEST: gi|193447589|gb|FK413210.1|FK413210
genomic: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattg ... gtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
EST: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATG AGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTEST: gi|193582906|gb|FK542334.1|FK542334
genomic: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattg ... gtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTT
EST: GTTTGGTGGACTTGGAGTTGGTAGCCTAGCGGTTCCAAATAGATCAAATG AGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGEST: gi|6666552|gb|AW278003.1|AW278003
genomic: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattg ... gtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
EST: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATG AGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGEST: gi|4313901|gb|AI461020.1|AI461020
genomic: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattg ... gtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
EST: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATG AGCCGNCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
genomic: GTTTGGTGGACTTGGAGCTGGTAGCCTAGCGGTTCCAAATAGATCAAATGgttagcattg ... gtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGG
tttacctaaattttatactctgctcagcctctcactgactttgttgtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATTAGAGCTCTTATCGCCACTTCAGG
cactgac putative branch site (score: 2)
ttgtctt putative PPT
taaattttatactct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatggacaaaaaatgccccccaaaacatagggacctaggtattatttacctaaattttatactctgctcagcctctcactgactttgttgtcttgtcagAGCCGCCAGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATTAGAGCTCTTATCGCCACTTCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - aaaaaat
- - - - - - - - cccccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gactttg