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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACGgtaagtagttctgctatcctgacctttccatgctcacccagtattgtgctcatccatgaaaagaaataaacttcgaatttgttgaactctatcctttagc...

Basic information

species Glycine max
transcript GLYMA16G22530.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193624234|gb|FK574254.1|FK574254
EST:     TCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACG                         GGAATCTGGTCAAACTGGCGGAGGCACTG
genomic: TCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACGgtaagtagtt ... gcttctgcagGGAATCTGGTCAAACTGGCGGAGGCACTG
EST: gi|23052390|gb|BU577147.1|BU577147
EST:     TCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACG                         GGAATCTGGTCAAACTGGCGGAGGCACTG
genomic: TCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACGgtaagtagtt ... gcttctgcagGGAATCTGGTCAAACTGGCGGAGGCACTG
EST: gi|254336879|gb|GR843058.1|GR843058
EST:     TCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACG                         GGAATCTGGTCAAACTGGCGGAGGCACTG
genomic: TCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACGgtaagtagtt ... gcttctgcagGGAATCTGGTCAAACTGGCGGAGGCACTG
EST: gi|193561485|gb|FK518996.1|FK518996
EST:     TCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACG                         GGAATCTGGTCAAACTGGCGGAGGCACTG
genomic: TCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACGgtaagtagtt ... gcttctgcagGGAATCTGGTCAAACTGGCGGAGGCACTG
EST: gi|193582906|gb|FK542334.1|FK542334
EST:     CAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACG                         GGAATCTGGTCAAACTGGCGGAGGCACTG
genomic: CAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACGgtaagtagtt ... gcttctgcagGGAATCTGGTCAAACTGGCGGAGGCACTG
EST: gi|208049106|gb|GD845447.1|GD845447
EST:     TCTTTCCAGCAAACTCTTATGTCTCAGCTTGGCCAGCAACAATCAACATG                         GGAATCTGGTCAAACTGGCGGAGGCACTG
genomic: TCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACGgtaagtagtt ... gcttctgcagGGAATCTGGTCAAACTGGCGGAGGCACTG
EST: gi|207809958|gb|GD781934.1|GD781934
EST:     TCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACG                         GGAATCTGGTCAAACTGGCGGAGGCACTG
genomic: TCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACGgtaagtagtt ... gcttctgcagGGAATCTGGTCAAACTGGCGGAGGCACTG
EST: gi|6666552|gb|AW278003.1|AW278003
EST:     TCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACG                         GGAATCTGGTCAAACTGGCGGAGGCACTG
genomic: TCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACGgtaagtagtt ... gcttctgcagGGAATCTGGTCAAACTGGCGGAGGCACTG
EST: gi|4313901|gb|AI461020.1|AI461020
EST:     TCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACG                         GGAATCTGGTCAAACTGGCGGAGGCACTG
genomic: TCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACGgtaagtagtt ... gcttctgcagGGAATCTGGTCAAACTGGCGGAGGCACTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACGgtaagtagttctgctatcctgacctttccatgctcacccagtattgtgctcatccatgaaaagaaataaacttcgaatttgttgaactctatcctttagc

- - - - - - - - AGCAAG
- - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaaa