1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatttatataccggacctagtacaagtataacatgctatgtgcatgtgttgaactgatccttctaatatctaatttacatcttagATCCTTGGTGCTAATACTGAGCAGCGTGGCATGCCGGATTTAAATTCTCTTAGAGAAGTAATGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTG
species | Glycine max |
transcript | GLYMA16G22530.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACATTGAATCAG ATCCTTGGTGCTAATACTGAGCAGCGTGGCATGCCGGATTTAAATTCTCTTEST: gi|254336879|gb|GR843058.1|GR843058
genomic: TCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACATTGAATCAGgtatttatat ... tacatcttagATCCTTGGTGCTAATACTGAGCAGCGTGGCATGCCGGATTTAAATTCTCTT
EST: TCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACATTGAATCAG ATCCTTGGTGCTAATACTGAGCAGCGTGGCATGCCGGATTTAAATTCTCTTEST: gi|6666552|gb|AW278003.1|AW278003
genomic: TCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACATTGAATCAGgtatttatat ... tacatcttagATCCTTGGTGCTAATACTGAGCAGCGTGGCATGCCGGATTTAAATTCTCTT
EST: AATGATGCAAAGTATGCTTTCCAACCCACAAACATTGAATCAG ATCCTTGGTGCTAATACTGAGCAGCGTGGCATGCCGGATTTAAATTCTCTTEST: gi|18041069|gb|BM309363.1|BM309363
genomic: AATGATGCAAAGTATGCTTTCCAACCCACAAACATTGAATCAGgtatttatat ... tacatcttagATCCTTGGTGCTAATACTGAGCAGCGTGGCATGCCGGATTTAAATTCTCTT
EST: TCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACATTGAATCAG ATCCTTGGTGCTAATACTGAGCAGCGTGGCATGCCGGATEST: gi|4313901|gb|AI461020.1|AI461020
genomic: TCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACATTGAATCAGgtatttatat ... tacatcttagATCCTTGGTGCTAATACTGAGCAGCGTGGCATGCCGGAT
EST: TCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACATTGAATCAG ATCCTTGGTGCTAATACTGAGCAGCGTGGCATGCCGGATTTAAATTCTCTT
genomic: TCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACATTGAATCAGgtatttatat ... tacatcttagATCCTTGGTGCTAATACTGAGCAGCGTGGCATGCCGGATTTAAATTCTCTT
acatgctatgtgcatgtgttgaactgatccttctaatatctaatttacatcttagATCCTTGGTGCTAATACTGAGCAGCGTGGCATGCCGGATTTAAATTCTCTTAGAGAAGTAATGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTG
taatatctaatttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttatataccggacctagtacaagtataacatgctatgtgcatgtgttgaactgatccttctaatatctaatttacatcttagATCCTTGGTGCTAATACTGAGCAGCGTGGCATGCCGGATTTAAATTCTCTTAGAGAAGTAATGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT