1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atctattatgataaagaggctacattgcctgctatgtaattttattcttccttgctttcagttaatattcttacagttctgtcttattgcacaatttcagCAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACG
species | Glycine max |
transcript | GLYMA16G22530.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATTCCTTCGTTTGTTTTCTTCACCTGAGACGTTGCAG CAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAAEST: gi|23052390|gb|BU577147.1|BU577147
genomic: AATTCCTTCGTTTGTTTTCTTCACCTGAGACGTTGCAGgtacacatat ... acaatttcagCAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAA
EST: TGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACGTTGCAG CAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAAEST: gi|254336879|gb|GR843058.1|GR843058
genomic: TGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACGTTGCAGgtacacatat ... acaatttcagCAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAA
EST: TGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACGTTGCAG CAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAAEST: gi|193561485|gb|FK518996.1|FK518996
genomic: TGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACGTTGCAGgtacacatat ... acaatttcagCAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAA
EST: TGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACGTTGCAG CAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAAEST: gi|208049106|gb|GD845447.1|GD845447
genomic: TGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACGTTGCAGgtacacatat ... acaatttcagCAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAA
EST: TGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACATTGCAG CAACTCTTGTCTTTCCAGCAAACTCTTATGTCTCAGCTTGGCCAGCAACAAEST: gi|207809958|gb|GD781934.1|GD781934
genomic: TGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACGTTGCAGgtacacatat ... acaatttcagCAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAA
EST: TGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACGTTGCAG CAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAAEST: gi|6666552|gb|AW278003.1|AW278003
genomic: TGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACGTTGCAGgtacacatat ... acaatttcagCAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAA
EST: TGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACGTTGCAG CAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAAEST: gi|4313901|gb|AI461020.1|AI461020
genomic: TGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACGTTGCAGgtacacatat ... acaatttcagCAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAA
EST: TGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACGTTGCAG CAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAA
genomic: TGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACGTTGCAGgtacacatat ... acaatttcagCAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAA
tcttccttgctttcagttaatattcttacagttctgtcttattgcacaatttcagCAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACG
ttcttac putative branch site (score: 2)
tttcagttaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctattatgataaagaggctacattgcctgctatgtaattttattcttccttgctttcagttaatattcttacagttctgtcttattgcacaatttcagCAACTCTTGTCTTTCCAGCAAGCTCTTATGTCTCAGCTTGGCCAGCAACAATCAACACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - cattgcc
- - - - - - - - - - - - - - -tgctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgtc