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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattaggcctctaattgcaacaagtatccattttctcatctttttttctttttctttttgtctaattatgatttcttttcttgtttgaacatgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATGCTATGATTATGTTCATGGGAAACACAACTACTTCATCTATCTCTTCCTT

Basic information

species Glycine max
transcript GLYMA12G08990.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31561906|gb|CD487744.1|CD487744
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|8284025|gb|BE021584.1|BE021584
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGTTGGGATTGGCTGCCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|22522978|gb|BU081789.1|BU081789
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|21677950|gb|BQ630301.1|BQ630301
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|9819434|gb|BE554947.1|BE554947
EST:     ATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
genomic: ATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|19052794|gb|BM731461.1|BM731461
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|10846314|gb|BF069232.1|BF069232
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|19269551|gb|BM885807.1|BM885807
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGTTGGGATTTGCTGCCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|10845779|gb|BF068828.1|BF068828
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|10845632|gb|BF071155.1|BF071155
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|120532206|gb|EH260339.1|EH260339
EST:     AATGCCATCAAGGGCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGTTGGGATTTGCTGCCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|27809128|gb|CB063550.1|CB063550
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|7284380|gb|AW596972.1|AW596972
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|10843125|gb|BF067159.1|BF067159
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|15813979|gb|BI786254.1|BI786254
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|7284909|gb|AW597396.1|AW597396
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|18735076|gb|BM528550.1|BM528550
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|58022282|gb|CX709023.1|CX709023
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|151407046|gb|EV276861.1|EV276861
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
EST: gi|151411882|gb|EV281693.1|EV281693
EST:     AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAG                         ACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG
genomic: AATGCCATCAAGGCCACCCCCAAAAAGACTCGATCCAAATTTGTTGAAAGgtcagtttct ... atgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttttctttttgtctaattatgatttcttttcttgtttgaacatgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATGCTATGATTATGTTCATGGGAAACACAACTACTTCATCTATCTCTTCCTT
              gtctaat  putative branch site (score: 3)
                 taattatgatttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tattaggcctctaattgcaacaagtatccattttctcatctttttttctttttctttttgtctaattatgatttcttttcttgtttgaacatgaacacagACTTAATTTACTGGAGCTGGGATTTGCTGTCTTCCTCTTCGTATGTGGATGCTATGATTATGTTCATGGGAAACACAACTACTTCATCTATCTCTTCCTT

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