1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATTACCATTTCACAGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACGgtaattcatttaattactttcaactattccaaaaacatgtaatgtgacacacatatgctacatgacatggtgcatagtcatagcattagttagttgcataataatcatttattactaagaaagttgctgttttgggaccttaatgcag
species | Glycine max |
transcript | GLYMA12G08990.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTNTCTTCGGTTTCAACG GAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGAEST: gi|6567058|gb|AW234685.1|AW234685
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACGgtaattcatt ... cttaatgcagGAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGA
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACG GAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGAEST: gi|26057348|gb|CA800262.1|CA800262
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACGgtaattcatt ... cttaatgcagGAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGA
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACG GAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGAEST: gi|10235376|gb|BE804264.1|BE804264
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACGgtaattcatt ... cttaatgcagGAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGA
EST: GCCACTCACGCTTTCTTCGGTTTCAACG GAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGAEST: gi|13477899|gb|BG507587.1|BG507587
genomic: GCCACTCACGCTTTCTTCGGTTTCAACGgtaattcatt ... cttaatgcagGAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGA
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACG GAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGAEST: gi|7587930|gb|AW703736.1|AW703736
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACGgtaattcatt ... cttaatgcagGAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGA
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACG GAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGAEST: gi|7588469|gb|AW704326.1|AW704326
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACGgtaattcatt ... cttaatgcagGAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGA
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACG GAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGAEST: gi|15815411|gb|BI787686.1|BI787686
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACGgtaattcatt ... cttaatgcagGAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGA
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACG GAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGAEST: gi|33390688|gb|CA853883.1|CA853883
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACGgtaattcatt ... cttaatgcagGAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGA
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACG GAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGAEST: gi|22522995|gb|BU081806.1|BU081806
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACGgtaattcatt ... cttaatgcagGAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGA
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACG GAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGAEST: gi|13477774|gb|BG507518.1|BG507518
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACGgtaattcatt ... cttaatgcagGAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGA
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACG GAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGA
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACGgtaattcatt ... cttaatgcagGAACTGCTGGCATTTGGAGAATAGCTGCTATCAATGAAGCTGGAGGGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATTACCATTTCACAGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTTCGGTTTCAACGgtaattcatttaattactttcaactattccaaaaacatgtaatgtgacacacatatgctacatgacatggtgcatagtcatagcattagttagttgcataataatcatttattactaagaaagttgctgttttgggaccttaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT