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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtactcatttccgttaagtactatatatattgaagggtaaagggacaatgatacttaagtaattccatgtctgttctgatattttcttttgtttacatttctgcagAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTTCGCAAAATCATCGCCCACATGGTCACCTTCTTCTTCTACTGTGTTGTGA

Basic information

species Glycine max
transcript GLYMA12G08990.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08990.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G22740.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagtactcatttccgttaagtactatatatattgaagggtaaagggacaatgatacttaagtaattccatgtctgttctgatattttcttttgtttacatttctgcagAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTTCGCAAAATCATCGCCCACATGGTCACCTTCTTCTTCTACTGTGTTGTGA
                     ||| ||   |||   ||   | |              ||   ||| | |   | |  ||||||  | |   |  | |        ||||||||| |  || |||||||||||||| || ||||||||||| ||||||||  | |||||||| || ||   |||||| || |  |||||||| |||||  
---------------------gtaataataataacaaaaatttacactttttcttcttttggttaacttc---tttaatctgatcctattactgatctgg-----cgcagAAAGTGAGATTCTGGAAGAAAGTGTACGTGATATACAGCTTCTTCTTTGTGAGGAAAATCATTGCACATTGGGTCACATTTTGTTTCTACTGCGTTGTTC

upper sequence: GLYMA12G08990.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0061g01230.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtactcatttccgttaagtactatatatattgaagggtaaagggacaatgatacttaagtaattccatgtctgttctgatattttcttttgtttacatttctgcagAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTTCGCAAAATCATCGCCCACATGGTCACCTTCTTCTTCTACTGTGTTGTGA
             |  ||| |||  ||||| | |   |  | || |  ||   || |  ||| |||    |||   |  || |     |  ||  |  | | |  |||||||||| | |||||||||||| || ||||| || |||||||| ||||| ||  | || ||| | ||||| ||||||||||| | | | |||||||| ||  
------------gttagtttagt-ttatatctttgtgatagaaatgtaactgaga-atgtaattaagataatg---ggactaag----ttgttaatcgataatcttgcagAAAGTGAGGTTTTGGAAGAAGGTATATGTGATCTACAGCTTCTTCTTAGTGAGGAAGATCGTGGCCCATATGGTCACCTTTTGCCTTTACTGTGTGGTAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20811335|gb|BQ295813.1|BQ295813
EST:     GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAG                         AAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
genomic: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactc ... atttctgcagAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
EST: gi|6567058|gb|AW234685.1|AW234685
EST:     GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAG                         ANAGTTAAGTTTTGGAAGACAGTGTATGTTATATACAGCTNTCTCTTTGTT
genomic: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactc ... atttctgcagAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
EST: gi|22931749|gb|BU548888.1|BU548888
EST:     GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAG                         AAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
genomic: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactc ... atttctgcagAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
EST: gi|26057348|gb|CA800262.1|CA800262
EST:     GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAG                         AAAGTTAGGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
genomic: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactc ... atttctgcagAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
EST: gi|10235376|gb|BE804264.1|BE804264
EST:     GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAG                         AAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
genomic: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactc ... atttctgcagAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
EST: gi|120532206|gb|EH260339.1|EH260339
EST:     GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAG                         AAAGTTAGGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
genomic: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactc ... atttctgcagAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
EST: gi|7587930|gb|AW703736.1|AW703736
EST:     GTCCTGCTAATTTGTTCCGCANAATGGTGATGGAGATTGTGAGGAACAAG                         AAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTT
genomic: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactc ... atttctgcagAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTT
EST: gi|7588469|gb|AW704326.1|AW704326
EST:     GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAG                         AAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTNTNTCTTTGTT
genomic: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactc ... atttctgcagAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
EST: gi|298163139|gb|HO011872.1|HO011872
EST:     GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAG                         AAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
genomic: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactc ... atttctgcagAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
EST: gi|8283281|gb|BE020842.1|BE020842
EST:     GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAG                         AAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
genomic: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactc ... atttctgcagAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
EST: gi|151411882|gb|EV281693.1|EV281693
EST:     GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAG                         AAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
genomic: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactc ... atttctgcagAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
EST: gi|14259637|gb|BG882545.1|BG882545
EST:     GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAG                         AAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
genomic: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactc ... atttctgcagAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttaagtaattccatgtctgttctgatattttcttttgtttacatttctgcagAAAGTTAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTTCGCAAAATCATCGCCCACATGGTCACCTTCTTCTTCTACTGTGTTGTGA
                      ttctgat  putative branch site (score: 3)
                              ttttcttttgtttaca  CT-rich tract
                           atattttcttttgttt  TA-rich tract