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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCCCTTACAATCCTGGTCCCTGAGGTTCATGTTCCAATCTGGGGAGCTGTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaatttgatcttgttttacacttttaacttgccataatagttagtccattaattttgatctaaaaagatgtgtggaactttggcag

Basic information

species Glycine max
transcript GLYMA12G08990.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20811335|gb|BQ295813.1|BQ295813
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|22931749|gb|BU548888.1|BU548888
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|31561906|gb|CD487744.1|CD487744
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|8284025|gb|BE021584.1|BE021584
EST:     CTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: CTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|21677950|gb|BQ630301.1|BQ630301
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|26057348|gb|CA800262.1|CA800262
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTC
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTC
EST: gi|10235376|gb|BE804264.1|BE804264
EST:     GATTATATTCCTTCTGTCATCACCATTCTTAATTCAGTTGGAACACCAAT                         GACCGTTCACCTTCTGTTCTATTGCATCCTCTTTGAGAATGCGATG
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATG
EST: gi|10846314|gb|BF069232.1|BF069232
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|19269551|gb|BM885807.1|BM885807
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|10845779|gb|BF068828.1|BF068828
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|120532206|gb|EH260339.1|EH260339
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|7284380|gb|AW596972.1|AW596972
EST:     GGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|298163139|gb|HO011872.1|HO011872
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|8283281|gb|BE020842.1|BE020842
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTACTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|151407046|gb|EV276861.1|EV276861
EST:     ATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: ATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|151411882|gb|EV281693.1|EV281693
EST:     GTTTATATTCCTACTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|14259637|gb|BG882545.1|BG882545
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT