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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTACAAGGTGTCGATTGGAGCAGCTTGCAATCTTTCATGGCCTGTGGATCGTCTCGTGATCCAAGTGCTCGATGATTCTACTGACCCTACCATCAAGgtaagtttttcacattttttttcagtatagttttgagctattcaatgtgagattttaacgtgtcaatcttaaagattggaatgtagtagctttatcttag...

Basic information

species Glycine max
transcript GLYMA12G08990.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08990.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0061g01230.t01 (Vitis vinifera), 5'ss of exon 2
GTGTACAAGGTGTCGATTGGAGCAGCTTGCAATCTTTCATGGCCTGTGGATCGTCTCGTGATCCAAGTGCTCGATGATTCTACTGACCCTACCATCAAGgtaagttttt----cacattttttttcagtatagttttgagctattcaatgtgaga---ttttaacgtgtcaatcttaaagattggaatgtagtagctttatcttag
|| |||||| | || |||||||| || |||   ||||| ||||| |  |||||||||||||||||||| ||||||||||| || |||||| | |||||||||  | | |    |||   ||| | ||| | |  |   |   |||||| |  | |   ||||    | ||  ||     ||| ||  |||  |  | ||   |   
GTTTACAAGCTCTCCATTGGAGCTGCATGCGGACTTTCTTGGCCGGCCGATCGTCTCGTGATCCAAGTCCTCGATGATTCAACAGACCCTGCTATCAAGgtagatatataacccacccatttatccaggaaa--taaaaagaattcaaagcaaaaatctttttttttttctttccccctgatcgg--tgtcttctcattgctt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37994604|gb|CF806287.1|CF806287
EST:     ATCGTCTCGTGATCCAAGTGCTCGATGATTCTACTGACCCTACCATCAAG                         CAAATGGTGGAGATGGAATGCAATAGATGGGCAAGTAAGGGCATAAACATA
genomic: ATCGTCTCGTGATCCAAGTGCTCGATGATTCTACTGACCCTACCATCAAGgtaagttttt ... ttgattgcagCAAATGGTGGAGATGGAATGCAATAGATGGGCAAGTAAGGGCATAAACATA
EST: gi|193454868|gb|FK421225.1|FK421225
EST:     ATCGTCTCGTGATCCAAGTGCTCGATGATTCTACTGACCCTACCATCAAG                         CAAATGGTGGAGATGGAATGCAATAGATGGGCAAGTAAGGGC
genomic: ATCGTCTCGTGATCCAAGTGCTCGATGATTCTACTGACCCTACCATCAAGgtaagttttt ... ttgattgcagCAAATGGTGGAGATGGAATGCAATAGATGGGCAAGTAAGGGC
EST: gi|10237914|gb|BE806802.1|BE806802
EST:     ATCGTCTCGTGATCCAAGTGCTCGATGATTCTACTGACCCTACCATCAAG                         CAAATGGTGGAGATGGAATGCAATAGATGGGCAAGTAAGGGCATAAACATA
genomic: ATCGTCTCGTGATCCAAGTGCTCGATGATTCTACTGACCCTACCATCAAGgtaagttttt ... ttgattgcagCAAATGGTGGAGATGGAATGCAATAGATGGGCAAGTAAGGGCATAAACATA