1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acagattgttactaatcattttcaccttttaattatgaagctaatcatgatatctacattgctaataagagatatctttcttcttgtttttttgtgacagTGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATTACCATTTCACAGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTT
species | Glycine max |
transcript | GLYMA12G08990.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTG TGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATTEST: gi|26057348|gb|CA800262.1|CA800262
genomic: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTGgtaaataatt ... tttgtgacagTGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATT
EST: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTG TGAATTCTGACGAGTGCTTATTGACAAGAATGCAAGAGATGTCCCTGGATTEST: gi|13477899|gb|BG507587.1|BG507587
genomic: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTGgtaaataatt ... tttgtgacagTGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATT
EST: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTG TGAATTCTGACGAGTGCTTATTGACAAGAATGCAAGAGATGTCCCTGGATTEST: gi|7587930|gb|AW703736.1|AW703736
genomic: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTGgtaaataatt ... tttgtgacagTGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATT
EST: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTG TGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATTEST: gi|15815411|gb|BI787686.1|BI787686
genomic: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTGgtaaataatt ... tttgtgacagTGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATT
EST: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTG TGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATTEST: gi|33390688|gb|CA853883.1|CA853883
genomic: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTGgtaaataatt ... tttgtgacagTGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATT
EST: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTG TGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATTEST: gi|22522995|gb|BU081806.1|BU081806
genomic: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTGgtaaataatt ... tttgtgacagTGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATT
EST: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTG TGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATTEST: gi|13477774|gb|BG507518.1|BG507518
genomic: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTGgtaaataatt ... tttgtgacagTGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATT
EST: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTG TGAATTCTGACGAGTGCTTATTGACAAGAATGCAAGAGATGTCCCTGGATTEST: gi|10237914|gb|BE806802.1|BE806802
genomic: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTGgtaaataatt ... tttgtgacagTGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATT
EST: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTG TGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGGAT
genomic: CTTGGTGGGCAACCCCGACATTGCTCTTGTTCAAGCTCGTTGGAGATTTGgtaaataatt ... tttgtgacagTGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGG-AT
catgatatctacattgctaataagagatatctttcttcttgtttttttgtgacagTGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATTACCATTTCACAGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTT
tgctaat putative branch site (score: 2)
tatctttcttcttgtt putative PPT
ttgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagattgttactaatcattttcaccttttaattatgaagctaatcatgatatctacattgctaataagagatatctttcttcttgtttttttgtgacagTGAATTCTGATGAGTGTTTATTGACAAGAATGCAAGAGATGTCCCTGGATTACCATTTCACAGTAGAGCAAGAAGTTGGATCAGCCACTCACGCTTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - -tcacctt
- - - - - - - - - - - - - - - - -tatgaag
- - - - - - - - - - - - - - - - - - - - - - -catgata
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctacatt