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gtgaatgaatgttccatctacttacttattagtacttccaaagtcagcaattaatgttctgcatgcaattaatggagaatattaattacatgtgattatgaattatcatttcaattttcttatactaagtcatggtgttttttttttcaatggcaactttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACAGATGGTCTTGTGGTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGA
species | Glycine max |
transcript | GLYMA12G08990.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAG GCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACEST: gi|6567058|gb|AW234685.1|AW234685
genomic: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGgtgaatgaat ... ctttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCAC
EST: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAG GCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACEST: gi|22931749|gb|BU548888.1|BU548888
genomic: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGgtgaatgaat ... ctttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCAC
EST: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAG GCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACEST: gi|26057348|gb|CA800262.1|CA800262
genomic: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGgtgaatgaat ... ctttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCAC
EST: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGTGACCTCCAG GCCAAAAGTGAGCTTCCCAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACEST: gi|10235376|gb|BE804264.1|BE804264
genomic: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGgtgaatgaat ... ctttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCAC
EST: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAG GCCAAAAGTGAGCTTTCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACEST: gi|120532206|gb|EH260339.1|EH260339
genomic: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGgtgaatgaat ... ctttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCAC
EST: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGTGACCTCCAG GCCAAAAGTGAGCTTCCCAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACEST: gi|13477899|gb|BG507587.1|BG507587
genomic: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGgtgaatgaat ... ctttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCAC
EST: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGTGACCTCCAG GCCAAAAGTGAGCTTCCCAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACEST: gi|7587930|gb|AW703736.1|AW703736
genomic: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGgtgaatgaat ... ctttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCAC
EST: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAG GCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACEST: gi|7588469|gb|AW704326.1|AW704326
genomic: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGgtgaatgaat ... ctttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCAC
EST: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAG GCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACEST: gi|15815411|gb|BI787686.1|BI787686
genomic: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGgtgaatgaat ... ctttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCAC
EST: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAG GCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACEST: gi|33390688|gb|CA853883.1|CA853883
genomic: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGgtgaatgaat ... ctttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCAC
EST: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAG GCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAEST: gi|22522995|gb|BU081806.1|BU081806
genomic: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGgtgaatgaat ... ctttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCA
EST: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAG GCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACEST: gi|13477774|gb|BG507518.1|BG507518
genomic: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGgtgaatgaat ... ctttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCAC
EST: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGTGACCTCCAG GCCAAAAGTGAGCTTCCCAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACEST: gi|298163139|gb|HO011872.1|HO011872
genomic: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGgtgaatgaat ... ctttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCAC
EST: GGGGATGGAAATTTTTGTACCTTGGAGACCTCCAG GCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACEST: gi|8283281|gb|BE020842.1|BE020842
genomic: GGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGgtgaatgaat ... ctttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCAC
EST: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAG GCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACEST: gi|151411882|gb|EV281693.1|EV281693
genomic: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGgtgaatgaat ... ctttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCAC
EST: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAG GCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACEST: gi|14259637|gb|BG882545.1|BG882545
genomic: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGgtgaatgaat ... ctttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCAC
EST: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAG GCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCAC
genomic: TTCGTGCTAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGgtgaatgaat ... ctttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCAC
caattttcttatactaagtcatggtgttttttttttcaatggcaactttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACAGATGGTCTTGTGGTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGA
tgttttttttttcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatgaatgttccatctacttacttattagtacttccaaagtcagcaattaatgttctgcatgcaattaatggagaatattaattacatgtgattatgaattatcatttcaattttcttatactaagtcatggtgttttttttttcaatggcaactttatatagGCCAAAAGTGAGCTTCCTAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACAGATGGTCTTGTGGTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA