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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattaatttgatcttgttttacacttttaacttgccataatagttagtccattaattttgatctaaaaagatgtgtggaactttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTTGCACCGTACCAAGGCAACATTTATAGGTCTCTTAGAGTATGGGAGGGCT

Basic information

species Glycine max
transcript GLYMA12G08990.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08990.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G22740.1 (Arabidopsis thaliana), 3'ss of exon 7
----------------gtatgattaatt-tgatcttgttttacacttttaacttgccataatagttagtccattaattttgatctaaaaagatgtgtggaact--ttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTTGCACCGTACCAAGGCAACATTTATAGGTCTCTTAGAGTATGGGAGGGCT
                ||||    | |  | ||||   |||      |    ||||    ||     ||   | | |||  |||       || | ||    |  |    ||||| ||||| || |||||||||||||| || || ||||||||||||||  ||||||| || ||||| ||  | || ||||| || |||   || ||||||
gtatattctgttccttgtatctcaagtcattatctctgtttctttcatagggttgcttatatgtcacgtaactgagtttaaatccttttctatttctgattttgttcaaaagGTCAATTCATCTGCTGTTCTATTGGATTCTATTCGAGAATGTGATGTCGCTGCACCGGACAAAGGCCACTCTCATTGGTCTGTTTGAGGCAGGAAGGGCT

upper sequence: GLYMA12G08990.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0061g01230.t01 (Vitis vinifera), 3'ss of exon 7
--gtatgattaatttgatc-ttgttttacacttttaacttgccat--aatagtt--agtccattaattttgatctaaaaagatgtgtggaactttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTTGCACCGTACCAAGGCAACATTTATAGGTCTCTTAGAGTATGGGAGGGCT
    |    |  | |   |    | |||     || | |||  ||  || || |  |   |||  || ||| ||  ||      | |   |  || ||||||| |||||||| |||||||| ||||| || |||||||||||||||||||| ||||| |||||||| ||  |||| |||||  ||||    ||||| |||
gtccacttctcctctctccaccatcttatgtgatttatttggtatcgaaaagctccataacatatatgttgttcctaagctcaatttcttaaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTTCCACCGGACCAAGGCCACTCTTATCGGTCTGCTAGAAGCAGGGAGAGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20811335|gb|BQ295813.1|BQ295813
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|22931749|gb|BU548888.1|BU548888
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|31561906|gb|CD487744.1|CD487744
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|8284025|gb|BE021584.1|BE021584
EST:     CTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: CTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|21677950|gb|BQ630301.1|BQ630301
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|26057348|gb|CA800262.1|CA800262
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTC
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTC
EST: gi|10235376|gb|BE804264.1|BE804264
EST:     GATTATATTCCTTCTGTCATCACCATTCTTAATTCAGTTGGAACACCAAT                         GACCGTTCACCTTCTGTTCTATTGCATCCTCTTTGAGAATGCGATG
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATG
EST: gi|10846314|gb|BF069232.1|BF069232
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|19269551|gb|BM885807.1|BM885807
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|10845779|gb|BF068828.1|BF068828
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|120532206|gb|EH260339.1|EH260339
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|7284380|gb|AW596972.1|AW596972
EST:     GGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|298163139|gb|HO011872.1|HO011872
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|8283281|gb|BE020842.1|BE020842
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTACTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|151407046|gb|EV276861.1|EV276861
EST:     ATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: ATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|151411882|gb|EV281693.1|EV281693
EST:     GTTTATATTCCTACTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
EST: gi|14259637|gb|BG882545.1|BG882545
EST:     GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAG                         GTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT
genomic: GTTTATATTCCTTCTGTCATCACCATTCTCAATTCAGTTGGAACACCAAGgtatgattaa ... actttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccataatagttagtccattaattttgatctaaaaagatgtgtggaactttggcagGTCCATTCACCTTCTGTTCTATTGGATCCTCTTTGAGAATGTGATGTCTTTGCACCGTACCAAGGCAACATTTATAGGTCTCTTAGAGTATGGGAGGGCT
                          atctaaa  putative branch site (score: 3)
                attaattttgatctaa  TA-rich tract