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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGTTTTCCACTTTGCACATCTTCGTCAGCTCCCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAGgttagctaaaacaaagttttctctgtcacaattatgtgtttgtgtagtatctgtaatgaactgacttgggataaaaaatcttttatgctgcttttggttctacag

Basic information

species Glycine max
transcript GLYMA12G08840.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os04g11880.3 (Oryza sativa), 5'ss of exon 7
ATGGGTTTTCCACTTTGCACATCTTCGTCAGCTCCCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAGgttagctaaaacaaagttttctctgtcacaattatgtg-tttgtgtagtatctgtaatgaactgacttgggataaaaaatcttttatgctgcttttggttctacag
 ||||| || |||||||| |||||||| || ||  |||| |||||||||||||| |||||||| || ||    ||  ||||||| |||||||||||  || |  ||    || | ||| |     ||   || | | |  |  | || | ||      |||    ||   || |  ||||||  |               
GTGGGTCTTTCACTTTGCCCATCTTCGCCAACTTGCTGTATTAGTTCCTTACATACCTACAGAGAATCCTCAGCTGAGTGATACAGCTTACGAGgt--gccattac----ttctttctattttgcttgcttgctctttacaacacctctgattctaatact---aattctaattggtttatgtag---------------

upper sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G040247_T01 (Zea mays), 5'ss of exon 9
ATGGGTTTTCCACTTTGCACATCTTCGTCAGCTCCCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAGgttagctaaaacaaagttttctctgtcacaattatgtgtttgtgtagtatctgtaatgaactgacttgggataaaaaatcttttatgctgcttttggttctacag
|||||| ||||||||||| ||||| || || || |||||||| || ||||| || ||||||||||| ||    ||  |||||||||| || |||||  | |    | || || |   |  ||  | ||  | ||       |||||||  | |    | |  |       | | | || ||  |               
ATGGGTCTTCCACTTTGCTCATCTCCGCCAACTTCCTGTTTTGGTCCCTTATATTCCTACAGAAAATCCTCAGCTGAGTGATACTGCATATGAGgtgtggtg---ctaacttgtaagttccattacta-attttaacacc-tatctgttgtaatactattctg-------attttcttgtgtag---------------

upper sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 9
ATGGGTTTTCCACTTTGCACATCTTCGTCAGCTCCCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAGgttagctaaaacaa-agttttctctgtcacaattatgtgtttgtgtagtatctg----taatgaactgacttgggataaaaaatcttttatgctgcttttggttctacag
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| || || ||| | |||||||||||||| |||||| |  |     | | |||| | | | | ||  | |        |    || |     ||| ||  |  |  |||| |  |  |||  |   |||              
ATGGGTTTTCCACTTTGCTCATCTCCGTCAGCTCCCTGTTTTAGTTCCATACATGCCAACAGAGAATCCAAGATTGCGTGATACTGCTTATGAGgtttgtaatgcggacaattttttttattagaagaaggaacaacaattaattcagacatcaataaaaagtataaggatgagtatccttcaagtgtgcaaac----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193529769|gb|FK484008.1|FK484008
EST:     TTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAG                         GTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTG
genomic: TTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAGgttagctaaa ... ggttctacagGTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTG
EST: gi|193481717|gb|FK446066.1|FK446066
EST:     TTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAG                         GTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTG
genomic: TTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAGgttagctaaa ... ggttctacagGTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTG
EST: gi|208056242|gb|GD850799.1|GD850799
EST:     TTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAG                         GTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTG
genomic: TTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAGgttagctaaa ... ggttctacagGTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTG