Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttcgaagaattttttcttaaatgcaggcagcaacaacatcaattaaatgtcatacgcatgctgtgtactagaatctgttgtctatttgttttaactgctaattcactctccttttttttttggttgaaattttcagCTTTTGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACACGATGCTATTCGTGGAAAG

Basic information

species Glycine max
transcript GLYMA12G08840.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08840.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os04g11880.3 (Oryza sativa), 3'ss of exon 9
gtaagtgttcgaagaattttttcttaaatgcaggcagcaac-aacat-caattaaatgtcatacgcatgctgtgtactag-aatctgttgtctatttgttttaactgctaattcactctccttttttttttggttgaaattttcagCTTTTGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACACGATGCTATTCGTGGAAAG
                             | | | |  | | ||| |  | ||||| |    ||   |||  |  | ||  |   | |||| |  ||   |  | || | |  ||  ||| |||  ||               ||||| ||||||||||||||||| || |||||||| || || ||| | || ||||| |||| ||  |||
-----------------------------gtaagtattacctaacttgtagttaaaaggttcacat-tgcattaaattaatagaattttgttttattacctgtattgttgacccaacctcatttcatt---------------cagCTCTTGAAGCCAGAAGTATTCGAATTTATTGAGAAGCACAACTTGCATGATGCCATTCATGACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatttgttttaactgctaattcactctccttttttttttggttgaaattttcagCTTTTGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACACGATGCTATTCGTGGAAAG
              tgctaat  putative branch site (score: 2)
                                                ttttc  putative PPT
                              ttttttttttggttga  TA-rich tract