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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGAGTGACGCGGCGTCGTGTATCGCCGTCGCGGAGCGCATGATCGCTCTCGGCACTCACGGCGGCACCGTTCACATCCTCGATTTTCTCGGGAATCAGgtcagtcgacgtgtgtcatctgtttgttgcgtaatttgtcgcggagagtctcgcgattactgtgaatttgagctgtttttgctcgaattggagctggtta...

Basic information

species Glycine max
transcript GLYMA12G08840.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os04g11880.3 (Oryza sativa), 5'ss of exon 1
TGCGAGTGACGCGGCGTCGTGTATCGCCGTCGCGGAGCGCATGATCGCTCTCGGCACTCACGGCGGCACCGTTCACATCCTCGATTTTCTCGGGAATCAGgtcagtcgacgtgtgtcatctgtttgttgcgtaatttgtcgcggagagtctcgcgattactgtgaatttgagctgtttttgctcgaattggagctggtta---
  | |  ||||| ||  ||   ||||||||||| || |||||| |||| |||||||| |||  ||||||| | ||||||||||| || |  || |||||||| |    ||     || |    ||   || ||  | || |  |   ||| |  | ||  || || |  ||  | |  | |       ||||  ||| |    
CTCCACCGACGCCGCCGCGGCCATCGCCGTCGCCGACCGCATGGTCGCGCTCGGCACGCACAACGGCACCCTCCACATCCTCGACTTCCAGGGTAATCAGgt-atcgtacccacctctttcccttcacgcatagctcgtag--ggcggtcgcttgctttgtgggattgggatttctggtaggataccgtggaattggatcgtc

upper sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G040247_T01 (Zea mays), 5'ss of exon 1
TGCGAGTGACGCGGCGTCGTGTATCGCCGTCGCGGAGCGCATGATCGCTCTCGGCACTCACGGCGGCACCGTTCACATCCTCGATTTTCTCGGGAATCAGgtcagtcgacgtgtgtcatctgtttgttgcgtaatttgtcgcggagagtctcgcgattac--tgtgaatttgagctgtttttgctcgaattggagctggtta----
  | |  ||||| ||| |    ||||||||||| || |||||| |||| ||||||||||||  ||||||  | ||||||||||| || |  || || |||||      ||   | || |||       | |   | | || | | |    | | | ||    || |||   | |  | | | ||    |  |   | || |     
CTCCACCGACGCCGCGGCCGCCATCGCCGTCGCCGACCGCATGGTCGCGCTCGGCACTCACAACGGCACGCTCCACATCCTCGACTTCCAGGGCAACCAGgt------acccttttcgtctcgccacagggcgctctctccctgcggaattggggcttgtgatgggaacgggcgaaggtgtggcgttgagggagacgggatcctgg

upper sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 1
TGCGAGTGACGCGGCGTCGTGTATCGCCGTCGCGGAGCGCATGATCGCTCTCGGCACTCACGGCGGCACCGTTCACATCCTCGATTTTCTCGGGAATCAGgtcagtcgacgtgtgtcatctgtttgttgcgtaatttgtc-gcggagagtctcgcgattactgtgaatttgag--ctgtttttgctcgaattggagctggtta
  | || ||||| ||||  ||||||||  | |||||||| |||||||| ||||||||||| | ||||||||| || || || ||| |||| || |||||||| |  |||  |   |   | ||| |     | | ||||  |  ||   ||||   | | |  |  ||||     ||| | ||  ||    ||    | ||  
ATCCAGCGACGCCGCGTGCTGTATCGCGATTGCGGAGCGGATGATCGCGCTCGGCACTCATGACGGCACCGTGCATATTCTTGATCTTCTTGGCAATCAGgtaatccga--ttgatttgcggttcggaatttgagttgtttgatgaagttctcttaaattccatctattttccttctgatgtttgtctgtatgttattagta-