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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTGAAGATCATATTGCATGGCTTCTTCAGCACGGGTGGCATGAAAAAGCTTTGGCTGTGGTTGAATCTGGCCAGGGACGGAGTGAACTACTTGATGAGgtatttaagtttatcctaattcaatctaatttctaatgattttatgcttattggaattagatgtgtaaaattacagaataaatggtacttgtgtagcata...

Basic information

species Glycine max
transcript GLYMA12G08840.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os04g11880.1 (Oryza sativa), 5'ss of exon 7
TACTGAAGATCATATTGCATGGCTTCTTCAGCACGGGTGGCATGAAAAAGCTTTGGCTGTGGTTGAATCTGGCCAGGGACGGAGTGAACTACTTGATGAGgtatttaagtttatcctaattcaatctaatttctaatgattttatgcttattggaattagatgtgtaaaattacagaataaatggtacttgtgtagcata------
| ||||||| |||||| | ||||||||||| || || ||||||||||| || |||||||  |||||| | || || ||||| |  || || ||||||||||||   ||||  |  |   || | | | |     | | | |  ||  |  |  | ||||  ||  | |   |   ||    |   |  |||| ||| |        
TGCTGAAGACCATATTTCTTGGCTTCTTCAACATGGTTGGCATGAAAAGGCATTGGCTGCAGTTGAAGCAGGACAAGGACGAACCGAGCTTCTTGATGAGgta---aagtagaaacagtttgagtttgaac---agtaaatgaataatggtatgcattatctgcttgatgatgaggatgctacccttattgtttaggaaccttcaa

upper sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G040247_T01 (Zea mays), 5'ss of exon 7
TACTGAAGATCATATTGCATGGCTTCTTCAGCACGGGTGGCATGAAAAAGCTTTGGCTGTGGTTGAATCTGGCCAGGGACGGAGTGAACTACTTGATGAGgt-atttaagtttatcctaattcaatctaatttctaatgattttatgcttattggaattagatgtgtaaaattacagaataaatggtacttgtgtagcata--
| |||||||||||||||| ||||||||||| || || || ||||||||||| |||||||  |||||  | || || ||||| | ||| || ||||||||||| |  ||     ||  |  ||  |   | ||  || | |       |        ||        |||      |       |  || ||  ||| | ||  
TGCTGAAGATCATATTGCTTGGCTTCTTCAACATGGTTGCCATGAAAAAGCATTGGCTGCAGTTGAGGCAGGGCAAGGACGCACTGAGCTTCTTGATGAGgtgaactagagaaatagttgtttga---atttgatagtaacgcagaacaatacatgatccctctgataatgagttattccttttactattttagtaacctacc

upper sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 7
TACTGAAGATCATATTGCATGGCTTCTTCAGCACGGGTGGCATGAAAAAGCTTTGGCTGTGGTTGAATCTGGCCAGGGACGGAGTGAACTACTTGATGAGgtatttaagtttatcctaattcaatctaatttctaatgattttatgcttattggaattaga-tgtgtaaaattacagaataaatggtacttgtgtagcata-----
| |||||||||||||  | ||||| ||||| || |||||||||||||||||||| || |  |||||| | || || || ||||||||||| ||||||||||| |||       ||||  |||| | | |||| ||   ||||| ||   |||    |   | | |||    ||          |  |  | | || |  |      
TGCTGAAGATCATATCTCTTGGCTCCTTCAACATGGGTGGCATGAAAAAGCTTTAGCAGCAGTTGAAGCAGGGCAAGGGCGGAGTGAACTCCTTGATGAGgttttt------ttcctttttcattttcatttttatgtattttttgggcattatgttcccactatgtgtctttgtgtttggggtttttttggggttgggtgggggg