Sequence
atgc intronic sequence ATGC exonic sequenceTCCAGATTATGCAAGGAAAATGTCTAGGAGATTTGTTGCTGGTGGTTTGGCTGGTCATTTATATTTAAATTCAAAGAAATGGTTAGGATACCGTGATCAGgtttgtaagaatgttttattacttatcacatatgttctcaacagtatcttttgtttgttaacgataaaattaccccgccctaccctccccaaaag
Basic information
species | Glycine max |
transcript | GLYMA12G08840.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0024g01120.t01 (Vitis vinifera), 5'ss of exon 1
TCCAGATTATGCAAGGAAAATGTCTAGGAGATTTGTTGCTGGTGGTTTGGCTGGTCATTTATATTTAAATT---CAAAGAAATGGTTAGGATACCGTGATCAGgtttgtaagaatgttttattacttatcacatatgttctcaacagtatcttttgtttgttaacgataaaattaccccgccctaccctccccaaaag
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------------AAAATGAAGTTCGAGTATCATCGC--CCAATGAA--GGCCATTGCTCTGGACCCAGATTATGCAAGAAAGACATCTAGAAGTTTTGTT---GTTGGTG-GTTTAGCAGgtcatttatt---tatttttttaataatacaaaaagatggctag-gttaaaaggatcaggttctacactctggtgaag
upper sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 2
TCCAGATTATGCAAGGAAAATGTCTAGGAGATTTGTTGCTGGTGGTTTGGCTGGTCATTTATATTTAAATTCAAAGAAATGGTTAGGATACCGTGATCAGgtttgtaagaatgttttattac-ttatcacatatgttctcaacagtatcttttgtttgttaacgataaaattaccccgccctaccctccccaaaag
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CCCAGATTATGCAAGAAAGACATCTAGAAGATTTGTTGCTGGTGGTTTAGCAGGTCATTTATTTTTTAATACAAAAAGATGGCTAGGTTACAAGGATCAGgtttgtgctagctcttgctaacgttgttgcttgtgccaaaacctggttactttcctggttcctga----attgcagaagtttatcctttttctag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16996827|gb|BM086199.1|BM086199EST: CTGGTCATTTATATTTAAATTCAAAGAAATGGTTAGGATACCGTGATCAG GTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGT
genomic: CTGGTCATTTATATTTAAATTCAAAGAAATGGTTAGGATACCGTGATCAGgtttgtaaga ... tccccaaaagGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCAGATTATGCAAGGAAAATGTCTAGGAGATTTGTTGCTGGTGGTTTGGCTGGTCATTTATATTTAAATTCAAAGAAATGGTTAGGATACCGTGATCAGgtttgtaagaatgttttattacttatcacatatgttctcaacagtatcttttgtttgttaacgataaaattaccccgccctaccctccccaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA