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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGCATATTATTGGAGCACACAGTTGGAAATCTTGATCCCCTTTACATTGTAAATAAGGTTCCTAATGGGTTGGAAATCCCTCGgtaagtaaataaatgtgatttaacagaatgtgaatattatcgaatcatagattgcatttgaaaaaattattagtatttgagctgaccttaagttccagagatatattgggtaagcattattttcaccaattctaatttctctacctgcttttctacag

Basic information

species Glycine max
transcript GLYMA12G08840.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 17
lower sequence: GRMZM2G040247_T01 (Zea mays), 5'ss of exon 17
GTGGGCATATTATTGGAGCACACAGTTGGAAATCTTGATCCCCTTTACATTGTAAATAAGGTTCCTAATGGGTTGGAAATCCCTCGgtaagtaaataaatgtgatttaacagaatgtgaat--attatcgaatcatagattgcatttgaaaaaattattagtatttgagctgaccttaagttccagagatatattgggtaagcattattttcaccaattctaatttctctacctgcttttctacag
|| || |   ||||||| || |||||||| ||||||||||| || |||||||| | |  ||||||| |||| || ||||| |||||||| ||     |     ||||| |  ||  | | |    ||  ||||      ||||||  ||   ||   || | |  |   ||       |  | |   |||   |     || ||||   | | |   ||     ||| || | |||||||  | ||
GTAGGGAATCTATTGGAACATACAGTTGGCAATCTTGATCCTCTGTACATTGTCAGTTTGGTTCCTGATGGCTTAGAAATACCTCGgtatgtt--ccatcaaaatttatcgtaaaataactgagctacagaatttc---ttgcat--gactgaaaccttggcaaatatactcgaaacgatctgccatgattcttaatccaaccatttcatcccctggttgagtgttcact-catgcttttg-atag

upper sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 17
lower sequence: AT1G08190.1 (Arabidopsis thaliana), 5'ss of exon 17
GTGGGCATATTATTGGAGCACACAGTTGGAAATCTTGATCCCCTTTACATTGTAAATAAGGTTCCTAATGGGTTGGAAATCCCTCGgtaagtaaataaatgtgatttaacagaatgtgaatattatcgaatcatagattgcatttgaaaaaattattagtatttgagctgaccttaagttccagagatatattgggtaagcattattttcaccaattctaatttctctacctgcttttctacag
|||||| |  | ||||||||||||||||| || || || || |||||||||||||||| ||| || ||||| |||||||| ||||||| |||   ||| | | |     ||   ||    ||   || | ||||   |||   || ||  |  | ||  || || |    || |  |    ||   || |  |                                                   
GTGGGCTTGCTGTTGGAGCACACAGTTGGCAACCTCGACCCTCTTTACATTGTAAATATGGTCCCAAATGGCTTGGAAATACCTCGgttagttt-taactattacccctcat--tgctgttac--tctattcatgagttg--gttcaatcacgtgttcttacttaaataaacatcgaccctcatctatgtgat---------------------------------------------------

upper sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 17
lower sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 17
GTGGGCATATTATTGGAGCACACAGTTGGAAATCTTGATCCCCTTTACATTGTAAATAAGGTTCCTAATGGGTTGGAAATCCCTCGgtaagtaaataaatgtgatttaacagaatgtgaatattatcgaatcatagattgcatttgaaaaaattattagtatttgagctgaccttaagttccagagatatattgggtaagcattattttcaccaattctaatttctctacctgcttttctacag
|| ||  | || ||||||||||| ||||| ||||||||||| || ||||||||||||| ||| || ||||| ||||| || ||| |||  ||  || ||  ||||||  || | | | | |   ||   |      ||   | ||    ||  ||  ||  ||    ||    ||  ||||      | | ||                                                   
GTAGGTGTGTTGTTGGAGCACACTGTTGGTAATCTTGATCCTCTCTACATTGTAAATATGGTGCCCAATGGCTTGGAGATACCTAGgttggt--atcaaaatgattt--caaatttttatttcaattaga------atcttaattttgcaacctagcagctttatttctagttttgtgttctttgttttttttttt------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14125294|gb|BG789732.1|BG789732
EST:     GATCCCCTTTACATTGTAAATAAGGTTCCTAATGGGTTGGAAATCCCTCG                         GCTCCGGGATCGGCTGGTTAAGATTATCACCGACTACAGGACTGAAACATC
genomic: GATCCCCTTTACATTGTAAATAAGGTTCCTAATGGGTTGGAAATCCCTCGgtaagtaaat ... ttttctacagGCTCCGGGATCGGCTGGTTAAGATTATCACCGACTACAGGACTGAAACATC
EST: gi|9565798|gb|BE475307.1|BE475307
EST:     GATCCCCTTTACATTGTAAATAAGGTTCCTAATGGGTTGGAAATCCCTCG                         GCTCCGGGATCGGCTGGTTAAGATTATCACCGACTACAGGACTGAAACATC
genomic: GATCCCCTTTACATTGTAAATAAGGTTCCTAATGGGTTGGAAATCCCTCGgtaagtaaat ... ttttctacagGCTCCGGGATCGGCTGGTTAAGATTATCACCGACTACAGGACTGAAACATC