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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagctaaaacaaagttttctctgtcacaattatgtgtttgtgtagtatctgtaatgaactgacttgggataaaaaatcttttatgctgcttttggttctacagGTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCATCTGTAATTTATTCTGCTTTACCTGTAA

Basic information

species Glycine max
transcript GLYMA12G08840.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08840.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 9
gttagctaaaacaaagttttctctgtcacaattatgtgtttgtgtagtatctgtaatgaactgacttgggataaaaaatcttttatgctgcttttggttctacagGTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCATCTGTAATTTATTCTGCTTTACCTGTAA
       |||  |  ||| ||||| |   |  | |   |   ||   ||||  |  |||     | |||||   ||    |    || || |  |  |  |||||||||||||||| ||  |||| |||| ||| || || || |||||||| ||||| ||||| ||||| |||||| |||| ||||||||||| || ||||| |
-----acaaattattgttgtctctatttaatctcttgatagttgacatatcccttctgattgaccctgggaatcaaggcatgagttgttgttggttttgttacagGTTGCTCTTGTAGCCCTGGCAACAAGTCCATCATTCCACAAGGATCTATTGTCAACTGTTAAATCTTGGCCACCTGTGATTTATTCTGCATTGCCTGTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193529769|gb|FK484008.1|FK484008
EST:     TTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAG                         GTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTG
genomic: TTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAGgttagctaaa ... ggttctacagGTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTG
EST: gi|193481717|gb|FK446066.1|FK446066
EST:     TTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAG                         GTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTG
genomic: TTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAGgttagctaaa ... ggttctacagGTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTG
EST: gi|208056242|gb|GD850799.1|GD850799
EST:     TTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAG                         GTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTG
genomic: TTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAGgttagctaaa ... ggttctacagGTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtaatgaactgacttgggataaaaaatcttttatgctgcttttggttctacagGTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCATCTGTAATTTATTCTGCTTTACCTGTAA
        aactgac  putative branch site (score: 2)
                    ataaaaaatcttttat  TA-rich tract