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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTGGCACTGCACTGGTTCATCTCTCCACTCATGTCCCAGCAATCAAGGACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGgtcagaatactgattgatttgcacatattttgatgagtatggtataattattgctttcacagcacacatgttccacaattatgcttaccgtatgaaattg...

Basic information

species Glycine max
transcript GLYMA12G08310.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308222714|gb|HO760624.1|HO760624
EST:     ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAG                         GCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
genomic: ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGgtcagaatac ... atatatgcagGCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
EST: gi|16282435|gb|BI945015.1|BI945015
EST:     ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAG                         GCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
genomic: ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGgtcagaatac ... atatatgcagGCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
EST: gi|16279336|gb|BI943382.1|BI943382
EST:     ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAG                         GCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
genomic: ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGgtcagaatac ... atatatgcagGCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
EST: gi|23728154|gb|BU762123.1|BU762123
EST:     ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAG                         GCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
genomic: ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGgtcagaatac ... atatatgcagGCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
EST: gi|31306254|gb|CD391457.1|CD391457
EST:     ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAG                         GCACTGATAGCTCCTGCAGCATTGATTGCTCTAAATGCTGGAATAGAAGGT
genomic: ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGgtcagaatac ... atatatgcagGCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
EST: gi|23728128|gb|BU762110.1|BU762110
EST:     ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAG                         GCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
genomic: ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGgtcagaatac ... atatatgcagGCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
EST: gi|7691416|gb|AW759544.1|AW759544
EST:     ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAG                         GCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
genomic: ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGgtcagaatac ... atatatgcagGCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
EST: gi|193512526|gb|FK469080.1|FK469080
EST:     ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAG                         GCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
genomic: ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGgtcagaatac ... atatatgcagGCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
EST: gi|213605398|gb|DB978791.1|DB978791
EST:     ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAG                         GCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
genomic: ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGgtcagaatac ... atatatgcagGCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
EST: gi|193648840|gb|FK598455.1|FK598455
EST:     ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAG                         GCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
genomic: ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGgtcagaatac ... atatatgcagGCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
EST: gi|208097228|gb|GD895875.1|GD895875
EST:     ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAG                         GCACTGATAGCTCCTGCAGC
genomic: ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGgtcagaatac ... atatatgcagGCACTGATAGCTCCTGCAGC
EST: gi|22929734|gb|BU546873.1|BU546873
EST:     ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAG                         GCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
genomic: ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGgtcagaatac ... atatatgcagGCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
EST: gi|7640193|gb|AW734499.1|AW734499
EST:     ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAG                         GCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
genomic: ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGgtcagaatac ... atatatgcagGCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
EST: gi|209722985|gb|BW668827.1|BW668827
EST:     ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTG-GCAAAAG                         GCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
genomic: ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGgtcagaatac ... atatatgcagGCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
EST: gi|209700192|gb|BW653010.1|BW653010
EST:     ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAG                         GCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
genomic: ACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGgtcagaatac ... atatatgcagGCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
EST: gi|213608432|gb|DB974962.1|DB974962
EST:     GAGCTGACATTGTGCAAAAG                         GCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT
genomic: GAGCTGACATTGTGCAAAAGgtcagaatac ... atatatgcagGCACTGATAGCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGTGGCACTGCACTGGTTCATCTCTCCACTCATGTCCCAGCAATCAAGGACAAGCTTGAGGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGgtcagaatactgattgatttgcacatattttgatgagtatggtataattattgctttcacagcacacatgttccacaattatgcttaccgtatgaaattg

- - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA