1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcgtaagtttaactgatgtgtttattaagaagtttatctaaatagggccaaagagttatctagtttctgagtctaactgtatggctttgttatcttgtagATTGACAGAGGGTATATCTCGCCTCAATTTGTTACAAACCCTGAGAAGTTGATTGTTGAATTTGAGAATGCGAGAGTGTTGATTACAGATCAGAAGATTT
species | Glycine max |
transcript | GLYMA12G08310.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTCTTCATCATCGTTTGAGACCACAGTTGAAGTGGAAGAAGGAATGGAG ATTGACAGAGGGTATATCTEST: gi|16282250|gb|BI944915.1|BI944915
genomic: AGTCTTCATCATCGTTTGAGACCACAGTTGAAGTGGAAGAAGGAATGGAGgtatacttct ... tatcttgtagATTGACAGAGGGTATATCT
EST: AGTCTTCATCATCGTTTGAGACCACAGTTGAAGTGGAAGAAGGAATGGAG ATTGACAGAGGGTATATCTCGCCTCAATTTGTTACAAACCCTGAGAAGTTG
genomic: AGTCTTCATCATCGTTTGAGACCACAGTTGAAGTGGAAGAAGGAATGGAGgtatacttct ... tatcttgtagATTGACAGAGGGTATATCTCGCCTCAATTTGTTACAAACCCTGAGAAGTTG
ggccaaagagttatctagtttctgagtctaactgtatggctttgttatcttgtagATTGACAGAGGGTATATCTCGCCTCAATTTGTTACAAACCCTGAGAAGTTGATTGTTGAATTTGAGAATGCGAGAGTGTTGATTACAGATCAGAAGATTT
gtctaac putative branch site (score: 2)
ctttgtt putative PPT
tttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgtaagtttaactgatgtgtttattaagaagtttatctaaatagggccaaagagttatctagtttctgagtctaactgtatggctttgttatcttgtagATTGACAGAGGGTATATCTCGCCTCAATTTGTTACAAACCCTGAGAAGTTGATTGTTGAATTTGAGAATGCGAGAGTGTTGATTACAGATCAGAAGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - -actgatg
- - - - - - - - - - - - - - - - - - - - - - - -ccaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggctttg