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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAATAAGCTGCGTGGTATCCTTAACGTTGCTGCCATTAAAGCTCCTGGCTTTGGTGAGCGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTGgtatgtgaaatttctatttgttaaagtttatagttggatattcactacatgttacattattttgttgctgatgtgaatgatttgtgtatgttggtaatgt...

Basic information

species Glycine max
transcript GLYMA12G08310.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207787435|gb|GD762754.1|GD762754
EST:     CGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTG                         GTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAG
genomic: CGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTGgtatgtgaaa ... taactgatagGTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAG
EST: gi|193353006|gb|FK318074.1|FK318074
EST:     CTTTGGTGAGCGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTG                         GTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAG
genomic: CTTTGGTGAGCGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTGgtatgtgaaa ... taactgatagGTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAG
EST: gi|16278494|gb|BI942933.1|BI942933
EST:     CTTTGGTGAGCGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTG                         GTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAG
genomic: CTTTGGTGAGCGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTGgtatgtgaaa ... taactgatagGTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAG
EST: gi|208049244|gb|GD849281.1|GD849281
EST:     TGCTTCAAGACATTGCTATATTGACTG                         GTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAG
genomic: TGCTTCAAGACATTGCTATATTGACTGgtatgtgaaa ... taactgatagGTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAG
EST: gi|208052726|gb|GD853843.1|GD853843
EST:     CGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTG                         GTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAG
genomic: CGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTGgtatgtgaaa ... taactgatagGTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAG