1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATTGCGGAAGCAATTGATAAGGTTGGACCTGATGGTGTTTTGTCCATTGAGTCTTCATCATCGTTTGAGACCACAGTTGAAGTGGAAGAAGGAATGGAGgtatacttctatgcagaattctgataatagtgaaaaatataagttttttttttttggatgagcttctcaataagtacttatgaaaatggaaaaaaaagaa...
species | Glycine max |
transcript | GLYMA12G08310.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGTCTTCATCATCGTTTGAGACCACAGTTGAAGTGGAAGAAGGAATGGAG ATTGACAGAGGGTATATCTEST: gi|16282250|gb|BI944915.1|BI944915
genomic: AGTCTTCATCATCGTTTGAGACCACAGTTGAAGTGGAAGAAGGAATGGAGgtatacttct ... tatcttgtagATTGACAGAGGGTATATCT
EST: AGTCTTCATCATCGTTTGAGACCACAGTTGAAGTGGAAGAAGGAATGGAG ATTGACAGAGGGTATATCTCGCCTCAATTTGTTACAAACCCTGAGAAGTTG
genomic: AGTCTTCATCATCGTTTGAGACCACAGTTGAAGTGGAAGAAGGAATGGAGgtatacttct ... tatcttgtagATTGACAGAGGGTATATCTCGCCTCAATTTGTTACAAACCCTGAGAAGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGCGGAAGCAATTGATAAGGTTGGACCTGATGGTGTTTTGTCCATTGAGTCTTCATCATCGTTTGAGACCACAGTTGAAGTGGAAGAAGGAATGGAGgtatacttctatgcagaattctgataatagtgaaaaatataagttttttttttttggatgagcttctcaataagtacttatgaaaatggaaaaaaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaaa