1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtaagaaacacgaatttgctgtgcaagtatcattttgtagtatattatttagttctttcttgagacactttcttgacaactttgtatatttaactgatagGTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAGTGGAGCAGCTTGGTTTGGCTAGGAAAATTACCATCTCCAAGGATTCTAC
species | Glycine max |
transcript | GLYMA12G08310.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTG GTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAGEST: gi|193353006|gb|FK318074.1|FK318074
genomic: CGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTGgtatgtgaaa ... taactgatagGTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAG
EST: CTTTGGTGAGCGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTG GTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAGEST: gi|16278494|gb|BI942933.1|BI942933
genomic: CTTTGGTGAGCGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTGgtatgtgaaa ... taactgatagGTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAG
EST: CTTTGGTGAGCGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTG GTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAGEST: gi|208049244|gb|GD849281.1|GD849281
genomic: CTTTGGTGAGCGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTGgtatgtgaaa ... taactgatagGTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAG
EST: TGCTTCAAGACATTGCTATATTGACTG GTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAGEST: gi|208052726|gb|GD853843.1|GD853843
genomic: TGCTTCAAGACATTGCTATATTGACTGgtatgtgaaa ... taactgatagGTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAG
EST: CGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTG GTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAG
genomic: CGGCGAAAGGCCCTGCTTCAAGACATTGCTATATTGACTGgtatgtgaaa ... taactgatagGTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAG
tatttagttctttcttgagacactttcttgacaactttgtatatttaactgatagGTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAGTGGAGCAGCTTGGTTTGGCTAGGAAAATTACCATCTCCAAGGATTCTAC
atttaac putative branch site (score: 3)
aactttgtatatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaacacgaatttgctgtgcaagtatcattttgtagtatattatttagttctttcttgagacactttcttgacaactttgtatatttaactgatagGTGCTGAGTTCCAAGCTAGTGATCTGGGTCTGCTTGTTGAAAACACCTCAGTGGAGCAGCTTGGTTTGGCTAGGAAAATTACCATCTCCAAGGATTCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - gaaacac
- - - - - - - tttgctg
- - - - - - - - - - -tgcaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacaac