1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccactctgtgactgactggtagaagagctactgttgccatggcctacttttatcgttcttgtgttataaattgtaatgatggcaagcatttctcgtgcagGTTATTGGGCTATTATCCACTGGGATTGACAACTGGGGACAT
species | Glycine max |
transcript | GLYMA08G19760.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGGTAAAAAAGATTTACAACACATAGCCCAAGTAATTGCCCTCAATATG GTTATTGGGCTATTATCCACTGGGATTGACAACTGGGGACATTTAGGAEST: gi|58020307|gb|CX707049.1|CX707049
genomic: GTGGTAAAAAAGATTTACAACACATAGCCCAAGTAATTGCCCTCAATATGgtaagtgtct ... tctcgtgcagGTTATTGGGCTATTATCCACTGGGATTGACAACTGGGGACATTTAGGA
EST: GTGGTAAAAAAGATTTACAACACATAGCCCAAGTAATTGCCCTCAATATG GTTATTGGGCTATTATCCACTGGGATTGACAACTGGGGACATEST: gi|58016763|gb|CX703505.1|CX703505
genomic: GTGGTAAAAAAGATTTACAACACATAGCCCAAGTAATTGCCCTCAATATGgtaagtgtct ... tctcgtgcagGTTATTGGGCTATTATCCACTGGGATTGACAACTGGGGACAT
EST: GTGGTAAAAAAGATTTACAACACATAGCCCAAGTAATTGCCCTCAATATG GTTATTGGGCTATTATCCACTGGGATTGACAACTGGGGACAT
genomic: GTGGTAAAAAAGATTTACAACACATAGCCCAAGTAATTGCCCTCAATATGgtaagtgtct ... tctcgtgcagGTTATTGGGCTATTATCCACTGGGATTGACAACTGGGGACAT
acttttatcgttcttgtgttataaattgtaatgatggcaagcatttctcgtgcagGTTATTGGGCTATTATCCACTGGGATTGACAACTGGGGACAT
catttctc CT-rich tract
ttataaattgtaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccactctgtgactgactggtagaagagctactgttgccatggcctacttttatcgttcttgtgttataaattgtaatgatggcaagcatttctcgtgcagGTTATTGGGCTATTATCCACTGGGATTGACAACTGGGGACAT
ccactct
- - - -gtgactg
- - - - - - - - - - - - - - - ctgttgc
- - - - - - - - - - - - - - - - - - -catggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagcat